Class/Object

org.bdgenomics.adam.sql

Variant

Related Docs: object Variant | package sql

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class Variant extends Product

Linear Supertypes
Product, Equals, AnyRef, Any
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Inherited
  1. Variant
  2. Product
  3. Equals
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Variant(contigName: Option[String], start: Option[Long], end: Option[Long], names: Seq[String], splitFromMultiAllelic: Option[Boolean], referenceAllele: Option[String], alternateAllele: Option[String], quality: Option[Double], filtersApplied: Option[Boolean], filtersPassed: Option[Boolean], filtersFailed: Seq[String], annotation: Option[VariantAnnotation])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val alternateAllele: Option[String]

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  5. val annotation: Option[VariantAnnotation]

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  6. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  7. def canEqual(that: Any): Boolean

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    Definition Classes
    Variant → Equals

  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val contigName: Option[String]

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  10. val end: Option[Long]

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  13. val filtersApplied: Option[Boolean]

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  14. val filtersFailed: Seq[String]

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  15. val filtersPassed: Option[Boolean]

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  16. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  17. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  18. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  19. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  20. val names: Seq[String]

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  21. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  22. final def notify(): Unit

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    Definition Classes
    AnyRef

  23. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  24. def productArity: Int

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    Definition Classes
    Variant → Product

  25. def productElement(i: Int): Any

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    Definition Classes
    Variant → Product

  26. def productIterator: Iterator[Any]

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    Definition Classes
    Product

  27. def productPrefix: String

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    Definition Classes
    Product

  28. val quality: Option[Double]

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  29. val referenceAllele: Option[String]

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  30. val splitFromMultiAllelic: Option[Boolean]

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  31. val start: Option[Long]

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  32. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  33. def toAvro: formats.avro.Variant

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  34. def toString(): String

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    Definition Classes
    AnyRef → Any

  35. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  36. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  37. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped