VariantAnnotation

Instance Constructors

new VariantAnnotation(ancestralAllele: Option[String], alleleCount: Option[Int], readDepth: Option[Int], forwardReadDepth: Option[Int], reverseReadDepth: Option[Int], referenceReadDepth: Option[Int], referenceForwardReadDepth: Option[Int], referenceReverseReadDepth: Option[Int], alleleFrequency: Option[Float], cigar: Option[String], dbSnp: Option[Boolean], hapMap2: Option[Boolean], hapMap3: Option[Boolean], validated: Option[Boolean], thousandGenomes: Option[Boolean], somatic: Option[Boolean], transcriptEffects: Seq[TranscriptEffect], attributes: Map[String, String])

Value Members

final def !=(arg0: Any): Boolean

Definition Classes
AnyRef → Any
final def ##(): Int

Definition Classes
AnyRef → Any
final def ==(arg0: Any): Boolean

Definition Classes
AnyRef → Any
val alleleCount: Option[Int]
val alleleFrequency: Option[Float]
val ancestralAllele: Option[String]
final def asInstanceOf[T0]: T0

Definition Classes
Any
val attributes: Map[String, String]
def canEqual(that: Any): Boolean

Definition Classes
VariantAnnotation → Equals
val cigar: Option[String]
def clone(): AnyRef

Attributes
protected[java.lang]
Definition Classes
AnyRef
Annotations
@throws( ... )
val dbSnp: Option[Boolean]
final def eq(arg0: AnyRef): Boolean

Definition Classes
AnyRef
def equals(arg0: Any): Boolean

Definition Classes
AnyRef → Any
def finalize(): Unit

Attributes
protected[java.lang]
Definition Classes
AnyRef
Annotations
@throws( classOf[java.lang.Throwable] )
val forwardReadDepth: Option[Int]
final def getClass(): Class[_]

Definition Classes
AnyRef → Any
val hapMap2: Option[Boolean]
val hapMap3: Option[Boolean]
def hashCode(): Int

Definition Classes
AnyRef → Any
final def isInstanceOf[T0]: Boolean

Definition Classes
Any
final def ne(arg0: AnyRef): Boolean

Definition Classes
AnyRef
final def notify(): Unit

Definition Classes
AnyRef
final def notifyAll(): Unit

Definition Classes
AnyRef
def productArity: Int

Definition Classes
VariantAnnotation → Product
def productElement(i: Int): Any

Definition Classes
VariantAnnotation → Product
def productIterator: Iterator[Any]

Definition Classes
Product
def productPrefix: String

Definition Classes
Product
val readDepth: Option[Int]
val referenceForwardReadDepth: Option[Int]
val referenceReadDepth: Option[Int]
val referenceReverseReadDepth: Option[Int]
val reverseReadDepth: Option[Int]
val somatic: Option[Boolean]
final def synchronized[T0](arg0: ⇒ T0): T0

Definition Classes
AnyRef
val thousandGenomes: Option[Boolean]
def toAvro: formats.avro.VariantAnnotation
def toString(): String

Definition Classes
AnyRef → Any
val transcriptEffects: Seq[TranscriptEffect]
val validated: Option[Boolean]
final def wait(): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def wait(arg0: Long, arg1: Int): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def wait(arg0: Long): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )

Related Docs: object VariantAnnotation | package sql

class VariantAnnotation extends Product

Instance Constructors

Value Members

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

val alleleCount: Option[Int]

val alleleFrequency: Option[Float]

val ancestralAllele: Option[String]

final def asInstanceOf[T0]: T0

val attributes: Map[String, String]

def canEqual(that: Any): Boolean

val cigar: Option[String]

def clone(): AnyRef

val dbSnp: Option[Boolean]

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

val forwardReadDepth: Option[Int]

final def getClass(): Class[_]

val hapMap2: Option[Boolean]

val hapMap3: Option[Boolean]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

def productArity: Int

def productElement(i: Int): Any

def productIterator: Iterator[Any]

def productPrefix: String

val readDepth: Option[Int]

val referenceForwardReadDepth: Option[Int]

val referenceReadDepth: Option[Int]

val referenceReverseReadDepth: Option[Int]

val reverseReadDepth: Option[Int]

val somatic: Option[Boolean]

final def synchronized[T0](arg0: ⇒ T0): T0

val thousandGenomes: Option[Boolean]

def toAvro: formats.avro.VariantAnnotation

def toString(): String

val transcriptEffects: Seq[TranscriptEffect]

val validated: Option[Boolean]

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped