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org
org.bdgenomics
org.bdgenomics.avocado
org.bdgenomics.avocado.genotyping
(case class)
DiscoveredVariant
(object)
DiscoverVariants
(object)
JointAnnotatorCaller
(object)
SquareOffReferenceModel
(object)
TrioCaller
org.bdgenomics.avocado.models
(case class)
Clipped
(case class)
Deletion
(case class)
Insertion
(case class)
Match
(object)
(case class)
Observation
(object)
(trait)
ObservationOperator
org.bdgenomics.avocado.realigner
(object)
Aligner
(object)
Realigner
org.bdgenomics.avocado.serialization
(class)
AvocadoKryoRegistrator
org.bdgenomics.avocado.util
(class)
ForestSerializer
(object)
LogPhred
(object)
LogUtils
(object)
PrefilterReads
(trait)
PrefilterReadsArgs
(object)
RewriteHets
(object)
TreeRegionJoin