org.bdgenomics.avocado.models

Clipped

case class Clipped(size: Int, soft: Boolean = true) extends ObservationOperator with Product with Serializable

A block representing bases clipped from the read.

size

The number of bases clipped.

soft

True if soft clipped, false if hard clipped.

Linear Supertypes
Serializable, Serializable, Product, Equals, ObservationOperator, AnyRef, Any
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  1. Clipped
  2. Serializable
  3. Serializable
  4. Product
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  6. ObservationOperator
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Instance Constructors

  1. new Clipped(size: Int, soft: Boolean = true)

    size

    The number of bases clipped.

    soft

    True if soft clipped, false if hard clipped.

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  7. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  9. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  10. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def nonEmpty: Boolean

    returns

    True if this block has non-zero length.

    Definition Classes
    ObservationOperator

  12. final def notify(): Unit

    Definition Classes
    AnyRef

  13. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  14. val size: Int

    The number of bases clipped.

    The number of bases clipped.

    Definition Classes
    Clipped → ObservationOperator

  15. val soft: Boolean

    True if soft clipped, false if hard clipped.

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  17. def toString(): String

    returns

    Returns "<length>S" if soft clipped, "<length>H" if hard clipped.

    Definition Classes
    Clipped → AnyRef → Any

  18. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from ObservationOperator

Inherited from AnyRef

Inherited from Any

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