Package

org.bdgenomics.deca

cli

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package cli

Visibility
  1. Public
  2. All

Type Members

  1. final class About extends AnyRef

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  2. class CNVer extends BDGSparkCommand[CNVerArgs]

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  3. class CNVerArgs extends Args4jBase with CoverageArgs with NormalizeArgs with DiscoveryArgs

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  4. trait CoverageArgs extends AnyRef

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  5. class Coverager extends BDGSparkCommand[CoveragerArgs]

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  6. class CoveragerArgs extends Args4jBase with CoverageArgs

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  7. class Discoverer extends BDGSparkCommand[DiscovererArgs]

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  8. class DiscovererArgs extends Args4jBase with DiscoveryArgs

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  9. trait DiscoveryArgs extends AnyRef

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  10. trait NormalizeArgs extends AnyRef

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  11. class Normalizer extends BDGSparkCommand[NormalizerArgs]

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  12. class NormalizerArgs extends Args4jBase with NormalizeArgs

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  13. class NormalizingDiscoverer extends BDGSparkCommand[NormalizingDiscovererArgs]

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  14. class NormalizingDiscovererArgs extends Args4jBase with NormalizeArgs with DiscoveryArgs

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Value Members

  1. object CNVer extends BDGCommandCompanion

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    Created by mlinderman on 4/12/17.

  2. object Coverager extends BDGCommandCompanion

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    Created by mlinderman on 3/27/17.

  3. object Discoverer extends BDGCommandCompanion

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    Created by mlinderman on 4/12/17.

  4. object Normalizer extends BDGCommandCompanion

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    Created by mlinderman on 2/22/17.

  5. object NormalizingDiscoverer extends BDGCommandCompanion

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    Created by mlinderman on 6/2/17.

  6. package util

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