FASTQ
datasources
FASTQDataSource
FASTQ
FASTQInputDataType
InputDataType
FILTER_PASSED
Columns
FLAGS
Columns
FLOWCELL_ID
Columns
FLOWCELL_LANE
Columns
FREQ_QUAL
QualityConstants
FastMath
utils
FastSerializer
utils
FeatureCounts
apps
FillPastQualitiesFromCacheTimer
PileupTimers
FillQualityForHigherAltsTimer
PileupTimers
FillQualityForLowerAltsTimer
PileupTimers
Format
RunConf
Fractional
scala
FullCorrections
broadcast
FwdIterator
IntervalTreeHTS
fasta
Reference
fillBaseQualitiesForExistingAlts
ExtendedReads
fillPastQualitiesFromCache
ExtendedReads
fillQualityForHigherAlts
ContigAggregate
fillQualityForLowerAlts
ContigAggregate
filterFlag
Conf
filterReadsByFlag
InternalParams
filter_passed
SequencedFragment
find
IntervalTreeHTS
findByIndex
IntervalTreeHTS
findMaxIndex
FastMath
findOverlaps
Range
flag
Alignment
flank
RangeMethods
flowcell_id
SequencedFragment
foreach
IntMap
foreachKey
IntMap
foreachValue
IntMap
format
RunConf
formats
biodatageeks
fromZip
IntMap
fst
FastSerializer