MAPQ
Columns
MATEREFIND
Columns
MDOperator
pileup
MDTagParser
pileup
Main
common
MapPartitionTimer
PileupTimers
MetricsCollector
metrics
MultiLociAlts
Alts
MultiLociAltsExtension
Alts
MultiLociQuals
Quals
MultiLociQualsExtension
Quals
magic_rdds
root
main
UTVFRegister
HiveThriftServer2Seq
SequilaThriftServer
Benchmark
CovRun
DepthOfCoverage
FeatureCounts
PileupApp
Main
CSVToJsonTags
map
PartitionCorrectionsExtension
PartitionShrinksExtension
MultiLociAltsExtension
SingleLocusAltsExtension
MultiLociQualsExtension
mapq
Alignment
max
IntervalTreeHTS
maxBaseQualityValue
InternalParams
maxBroadcastSize
JoinOptimizer
JoinOptimizerChromosome
maxGap
IntervalTreeJoinOptimChromosome
maxPointOfCollection
Node
maxPos
ContigRange
Range
maxPosition
ContigAggregate
maxQuality
Conf
maxQualityIndex
Conf
maxSeqLen
ContigAggregate
merge
CoverageAccumulatorV2
PileupAccumulator
MultiLociAltsExtension
SingleLocusAltsExtension
MultiLociQualsExtension
SingleLocusQualsExtension
FastMath
mergeArrays
CoverageMethodsMos
methods
rangejoins
metrics
common
min
IntervalTreeHTS
minOverlap
IntervalTreeJoinOptimChromosome
minOverlapper
IntervalTreeHTS
minPointOfCollection
Node
minPos
ContigRange
RightCovEdge
Range
Tail
minmax
UpdateStruct
model
pileup
mutable
collection