QNAME
Columns
QUALS
Columns
QUAL_INDEX_SHIFT
QualityConstants
QualityCache
model
QualityConstants
conf
QualityFunctions
udfs
Quals
model
qname
Alignment
qual
PileupTemplate
Alignment
SequencedFragment
PileupPlan
qualityArrayLength
Conf
qualityCache
Correction
ContigAggregate
quals
Correction
Tail
BlockProperties
ContigAggregate
qualsArray
ReadQualSummary
qualsToCharMap
QualityFunctions
qualsToCoverage
QualityFunctions
qualsToMap
QualityFunctions