gendChemicalKBML

gendProteinFamilyKBML

gendProteinKBML

SimplePhysicalEntityUtils

general

Subsumption

genericEntityReferences

genericInside

geneticInteractions

getActivations

getAllThemes

getArgStats

getByRdfId

getCausalPredecessors

getComplex

getComplexes

getContextKey

getCorefFeatures

getCrossSentenceSyntacticPaths

getDelimiter

DSVParser

getDependencyRelations

getDescription

getE1E2

getEER

getEERs

getEntities

getEntityReferenceById

Fragmenter

getEntriesFromDSVPaper

AssemblyRelationClassifier

getEntriesFromNXMLPaper

getEntriesFromPaper

getEquivalenceLinks

getEquivalentEERs

getEvent

getEventLabel

getEventRows

getEvents

getEvidence

getFileName

getID

getId

getIncomingDependencyRelations

getIndex

getKey

getLabelFeatures

getLabelPair

getLabelScores

getLemmaTagSequence

getLookupKey

getMentionLabel

getMentionLabels

getMentionState

getMentionsFromFriesEntries

getMentionsFromPaper

getMentionsFromStandoff

getMentionsFromText

getMentionsfromAnnotations

AssemblyRelationClassifier

getModel

getModificationLabel

DarpaActions

getModifiers

DarpaActions

getObjects

Fragmenter

getObservationsMatrixStrings

RuleBasedContextEngine

getOutgoingDependencyRelations

getPMID

getPTMrepresentation

getPTMs

getPolarityLabel

getPrecedenceRelations

getRegulation

getRegulations

getResolvedForm

getResolvedSentenceIndices

getRootPaths

getRows

getSententialSpan

getShallowFeatures

getShortestPathDistances

getShortestPathTokenIndices

getShortestPathVariants

getShortestPaths

getSimpleEntities

AssemblyManager

getSimpleEntitiesByModification

getSimpleEntity

getSimpleEvent

getSimpleEvents

getSpeciesContext

getStatesMatrixStrings

RuleBasedContextEngine

getText

AssemblyExporter

getTextualEvidence

Row

getTokenCharOffsets

getTokenCharOffsetsMap

getTrigger

getTriggerArgPathDistances

getTriggerArgPaths

getTriggerToTriggerPath

getTriggerToTriggerPathDistances