org.geneontology.reasoner

Class ExpressionMaterializingReasoner

java.lang.Object

org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

org.geneontology.reasoner.ExpressionMaterializingReasoner

All Implemented Interfaces:

OWLExtendedReasoner, org.semanticweb.owlapi.reasoner.OWLReasoner

public class ExpressionMaterializingReasoner
extends org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase
implements OWLExtendedReasoner

This wraps an existing reasoner to implement OWLExtendedReasoner. It works by materializing expressions of the form "R some Y" as equivalence axioms prior to reasoning. After reasoning, it can retrieve these anonymous superclasses. Currently limited to a single level of nesting - in principle it could be extended to expressions of depth k In terms of performance the biggest impact are the number of OWLObjectProperty for which the materialization is required. It is usually *NOT* recommended to use all properties of an ontology signature.

Author:

cjm

Constructor Summary

Constructors

Modifier	Constructor and Description
	ExpressionMaterializingReasoner(org.semanticweb.owlapi.model.OWLOntology ont, org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory)
	ExpressionMaterializingReasoner(org.semanticweb.owlapi.model.OWLOntology ont, org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory, org.semanticweb.owlapi.reasoner.BufferingMode bufferingMode)
protected	ExpressionMaterializingReasoner(org.semanticweb.owlapi.model.OWLOntology rootOntology, org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory, org.semanticweb.owlapi.reasoner.OWLReasonerConfiguration configuration, org.semanticweb.owlapi.reasoner.BufferingMode bufferingMode)

Method Summary

Modifier and Type	Method and Description
void	dispose()
void	flush()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass>	getBottomClassNode()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLDataProperty>	getBottomDataPropertyNode()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getBottomObjectPropertyNode()
org.semanticweb.owlapi.reasoner.BufferingMode	getBufferingMode()
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getDataPropertyDomains(org.semanticweb.owlapi.model.OWLDataProperty pe, boolean direct)
Set<org.semanticweb.owlapi.model.OWLLiteral>	getDataPropertyValues(org.semanticweb.owlapi.model.OWLNamedIndividual ind, org.semanticweb.owlapi.model.OWLDataProperty pe)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLNamedIndividual>	getDifferentIndividuals(org.semanticweb.owlapi.model.OWLNamedIndividual ind)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getDisjointClasses(org.semanticweb.owlapi.model.OWLClassExpression ce)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLDataProperty>	getDisjointDataProperties(org.semanticweb.owlapi.model.OWLDataPropertyExpression pe)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getDisjointObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass>	getEquivalentClasses(org.semanticweb.owlapi.model.OWLClassExpression ce)
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLDataProperty>	getEquivalentDataProperties(org.semanticweb.owlapi.model.OWLDataProperty pe)
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getEquivalentObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
org.semanticweb.owlapi.reasoner.FreshEntityPolicy	getFreshEntityPolicy()
org.semanticweb.owlapi.reasoner.IndividualNodeSetPolicy	getIndividualNodeSetPolicy()
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLNamedIndividual>	getInstances(org.semanticweb.owlapi.model.OWLClassExpression ce, boolean direct)
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getInverseObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getObjectPropertyDomains(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe, boolean direct)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getObjectPropertyRanges(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe, boolean direct)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLNamedIndividual>	getObjectPropertyValues(org.semanticweb.owlapi.model.OWLNamedIndividual ind, org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
Set<org.semanticweb.owlapi.model.OWLAxiom>	getPendingAxiomAdditions()
Set<org.semanticweb.owlapi.model.OWLAxiom>	getPendingAxiomRemovals()
List<org.semanticweb.owlapi.model.OWLOntologyChange>	getPendingChanges()
Set<org.semanticweb.owlapi.reasoner.InferenceType>	getPrecomputableInferenceTypes()
String	getReasonerName()
org.semanticweb.owlapi.util.Version	getReasonerVersion()
org.semanticweb.owlapi.model.OWLOntology	getRootOntology()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLNamedIndividual>	getSameIndividuals(org.semanticweb.owlapi.model.OWLNamedIndividual ind)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getSubClasses(org.semanticweb.owlapi.model.OWLClassExpression ce, boolean direct)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLDataProperty>	getSubDataProperties(org.semanticweb.owlapi.model.OWLDataProperty pe, boolean direct)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getSubObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe, boolean direct)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getSuperClasses(org.semanticweb.owlapi.model.OWLClassExpression ce, boolean direct)
Set<org.semanticweb.owlapi.model.OWLClass>	getSuperClassesOver(org.semanticweb.owlapi.model.OWLClassExpression ce, org.semanticweb.owlapi.model.OWLObjectProperty p, boolean direct) Note that this is not a standard reasoner method.
Set<org.semanticweb.owlapi.model.OWLClassExpression>	getSuperClassExpressions(org.semanticweb.owlapi.model.OWLClassExpression ce, boolean direct) Note that this is not a standard reasoner method.
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLDataProperty>	getSuperDataProperties(org.semanticweb.owlapi.model.OWLDataProperty pe, boolean direct)
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getSuperObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe, boolean direct)
long	getTimeOut()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass>	getTopClassNode()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLDataProperty>	getTopDataPropertyNode()
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression>	getTopObjectPropertyNode()
org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass>	getTypes(org.semanticweb.owlapi.model.OWLNamedIndividual ind, boolean direct)
org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass>	getUnsatisfiableClasses()
org.semanticweb.owlapi.reasoner.OWLReasoner	getWrappedReasoner()
protected void	handleChanges(Set<org.semanticweb.owlapi.model.OWLAxiom> addAxioms, Set<org.semanticweb.owlapi.model.OWLAxiom> removeAxioms)
void	interrupt()
boolean	isConsistent()
boolean	isEntailed(org.semanticweb.owlapi.model.OWLAxiom axiom)
boolean	isEntailed(Set<? extends org.semanticweb.owlapi.model.OWLAxiom> axioms)
boolean	isEntailmentCheckingSupported(org.semanticweb.owlapi.model.AxiomType<?> axiomType)
boolean	isIncludeImports()
boolean	isPrecomputed(org.semanticweb.owlapi.reasoner.InferenceType inferenceType)
boolean	isSatisfiable(org.semanticweb.owlapi.model.OWLClassExpression classExpression)
void	materializeExpressions() Materialize expressions for all classes and properties in the ontology signature.
void	materializeExpressions(Collection<org.semanticweb.owlapi.model.OWLObjectProperty> properties) Materialize expressions for a collection of properties and all classes in the ontology signature.
void	materializeExpressions(org.semanticweb.owlapi.model.OWLObjectProperty p) Materialize expressions a property and all classes in the ontology signature.
void	precomputeInferences(org.semanticweb.owlapi.reasoner.InferenceType... inferenceTypes)
void	setIncludeImports(boolean includeImports)

Methods inherited from class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getOWLDataFactory, getReasonerAxioms, getReasonerConfiguration, handleRawOntologyChanges

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpressionMaterializingReasoner

protected ExpressionMaterializingReasoner(org.semanticweb.owlapi.model.OWLOntology rootOntology,
                                          org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory,
                                          org.semanticweb.owlapi.reasoner.OWLReasonerConfiguration configuration,
                                          org.semanticweb.owlapi.reasoner.BufferingMode bufferingMode)

ExpressionMaterializingReasoner

public ExpressionMaterializingReasoner(org.semanticweb.owlapi.model.OWLOntology ont,
                                       org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory)

ExpressionMaterializingReasoner

public ExpressionMaterializingReasoner(org.semanticweb.owlapi.model.OWLOntology ont,
                                       org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory,
                                       org.semanticweb.owlapi.reasoner.BufferingMode bufferingMode)

Method Detail

getWrappedReasoner

public org.semanticweb.owlapi.reasoner.OWLReasoner getWrappedReasoner()

setIncludeImports

public void setIncludeImports(boolean includeImports)

Parameters:

includeImports -

isIncludeImports

public boolean isIncludeImports()

Returns:

boolean

materializeExpressions

public void materializeExpressions()

Materialize expressions for all classes and properties in the ontology signature.

See Also:

if it should include imports

materializeExpressions

public void materializeExpressions(Collection<org.semanticweb.owlapi.model.OWLObjectProperty> properties)

Materialize expressions for a collection of properties and all classes in the ontology signature.

Parameters:

properties -

See Also:

if it should include imports

materializeExpressions

public void materializeExpressions(org.semanticweb.owlapi.model.OWLObjectProperty p)

Materialize expressions a property and all classes in the ontology signature.

Parameters:

p -

See Also:

if it should include imports

getSuperClassExpressions

public Set<org.semanticweb.owlapi.model.OWLClassExpression> getSuperClassExpressions(org.semanticweb.owlapi.model.OWLClassExpression ce,
                                                                                     boolean direct)
                                                                              throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                     org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException,
                                                                                     org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                     org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                     org.semanticweb.owlapi.reasoner.TimeOutException

Description copied from interface: OWLExtendedReasoner

Note that this is not a standard reasoner method.

Specified by:

getSuperClassExpressions in interface OWLExtendedReasoner

Returns:

all superclasses, where superclasses can include anon class expressions

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getSuperClassesOver

public Set<org.semanticweb.owlapi.model.OWLClass> getSuperClassesOver(org.semanticweb.owlapi.model.OWLClassExpression ce,
                                                                      org.semanticweb.owlapi.model.OWLObjectProperty p,
                                                                      boolean direct)
                                                               throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                      org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException,
                                                                      org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                      org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                      org.semanticweb.owlapi.reasoner.TimeOutException

Description copied from interface: OWLExtendedReasoner

Note that this is not a standard reasoner method.

Specified by:

getSuperClassesOver in interface OWLExtendedReasoner

Returns:

all superclasses, where superclasses can include anon class expressions using p

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getReasonerName

public String getReasonerName()

Specified by:

getReasonerName in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getReasonerVersion

public org.semanticweb.owlapi.util.Version getReasonerVersion()

Specified by:

getReasonerVersion in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getBufferingMode

public org.semanticweb.owlapi.reasoner.BufferingMode getBufferingMode()

Specified by:

getBufferingMode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getBufferingMode in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

flush

public void flush()

Specified by:

flush in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

flush in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getPendingChanges

public List<org.semanticweb.owlapi.model.OWLOntologyChange> getPendingChanges()

Specified by:

getPendingChanges in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getPendingChanges in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getPendingAxiomAdditions

public Set<org.semanticweb.owlapi.model.OWLAxiom> getPendingAxiomAdditions()

Specified by:

getPendingAxiomAdditions in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getPendingAxiomAdditions in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getPendingAxiomRemovals

public Set<org.semanticweb.owlapi.model.OWLAxiom> getPendingAxiomRemovals()

Specified by:

getPendingAxiomRemovals in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getPendingAxiomRemovals in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getRootOntology

public org.semanticweb.owlapi.model.OWLOntology getRootOntology()

Specified by:

getRootOntology in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getRootOntology in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

interrupt

public void interrupt()

Specified by:

interrupt in interface org.semanticweb.owlapi.reasoner.OWLReasoner

precomputeInferences

public void precomputeInferences(org.semanticweb.owlapi.reasoner.InferenceType... inferenceTypes)
                          throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                 org.semanticweb.owlapi.reasoner.TimeOutException,
                                 org.semanticweb.owlapi.reasoner.InconsistentOntologyException

Specified by:

precomputeInferences in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

isPrecomputed

public boolean isPrecomputed(org.semanticweb.owlapi.reasoner.InferenceType inferenceType)

Specified by:

isPrecomputed in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getPrecomputableInferenceTypes

public Set<org.semanticweb.owlapi.reasoner.InferenceType> getPrecomputableInferenceTypes()

Specified by:

getPrecomputableInferenceTypes in interface org.semanticweb.owlapi.reasoner.OWLReasoner

isConsistent

public boolean isConsistent()
                     throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                            org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

isConsistent in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

isSatisfiable

public boolean isSatisfiable(org.semanticweb.owlapi.model.OWLClassExpression classExpression)
                      throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                             org.semanticweb.owlapi.reasoner.TimeOutException,
                             org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException,
                             org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                             org.semanticweb.owlapi.reasoner.InconsistentOntologyException

Specified by:

isSatisfiable in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

getUnsatisfiableClasses

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass> getUnsatisfiableClasses()
                                                                                                    throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                           org.semanticweb.owlapi.reasoner.TimeOutException,
                                                                                                           org.semanticweb.owlapi.reasoner.InconsistentOntologyException

Specified by:

getUnsatisfiableClasses in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

isEntailed

public boolean isEntailed(org.semanticweb.owlapi.model.OWLAxiom axiom)
                   throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                          org.semanticweb.owlapi.reasoner.UnsupportedEntailmentTypeException,
                          org.semanticweb.owlapi.reasoner.TimeOutException,
                          org.semanticweb.owlapi.reasoner.AxiomNotInProfileException,
                          org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                          org.semanticweb.owlapi.reasoner.InconsistentOntologyException

Specified by:

isEntailed in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.UnsupportedEntailmentTypeException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.AxiomNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

isEntailed

public boolean isEntailed(Set<? extends org.semanticweb.owlapi.model.OWLAxiom> axioms)
                   throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                          org.semanticweb.owlapi.reasoner.UnsupportedEntailmentTypeException,
                          org.semanticweb.owlapi.reasoner.TimeOutException,
                          org.semanticweb.owlapi.reasoner.AxiomNotInProfileException,
                          org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                          org.semanticweb.owlapi.reasoner.InconsistentOntologyException

Specified by:

isEntailed in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.UnsupportedEntailmentTypeException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.AxiomNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

isEntailmentCheckingSupported

public boolean isEntailmentCheckingSupported(org.semanticweb.owlapi.model.AxiomType<?> axiomType)

Specified by:

isEntailmentCheckingSupported in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getTopClassNode

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass> getTopClassNode()

Specified by:

getTopClassNode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getBottomClassNode

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass> getBottomClassNode()

Specified by:

getBottomClassNode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getSubClasses

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getSubClasses(org.semanticweb.owlapi.model.OWLClassExpression ce,
                                                                                                    boolean direct)
                                                                                             throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                    org.semanticweb.owlapi.reasoner.TimeOutException,
                                                                                                    org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                    org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                    org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

Specified by:

getSubClasses in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

getSuperClasses

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getSuperClasses(org.semanticweb.owlapi.model.OWLClassExpression ce,
                                                                                                      boolean direct)
                                                                                               throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                      org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException,
                                                                                                      org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                      org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                      org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getSuperClasses in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getEquivalentClasses

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLClass> getEquivalentClasses(org.semanticweb.owlapi.model.OWLClassExpression ce)
                                                                                                 throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                        org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException,
                                                                                                        org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                        org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                        org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getEquivalentClasses in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getDisjointClasses

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getDisjointClasses(org.semanticweb.owlapi.model.OWLClassExpression ce)
                                                                                                  throws org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                         org.semanticweb.owlapi.reasoner.TimeOutException,
                                                                                                         org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                         org.semanticweb.owlapi.reasoner.InconsistentOntologyException

Specified by:

getDisjointClasses in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

getTopObjectPropertyNode

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getTopObjectPropertyNode()

Specified by:

getTopObjectPropertyNode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getBottomObjectPropertyNode

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getBottomObjectPropertyNode()

Specified by:

getBottomObjectPropertyNode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getSubObjectProperties

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getSubObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe,
                                                                                                                                boolean direct)
                                                                                                                         throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                                org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                                org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                                org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getSubObjectProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getSuperObjectProperties

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getSuperObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe,
                                                                                                                                  boolean direct)
                                                                                                                           throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                                  org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                                  org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                                  org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getSuperObjectProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getEquivalentObjectProperties

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getEquivalentObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
                                                                                                                             throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                                    org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                                    org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                                    org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getEquivalentObjectProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getDisjointObjectProperties

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getDisjointObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
                                                                                                                              throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                                     org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                                     org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                                     org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getDisjointObjectProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getInverseObjectProperties

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLObjectPropertyExpression> getInverseObjectProperties(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
                                                                                                                          throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                                 org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                                 org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                                 org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getInverseObjectProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getObjectPropertyDomains

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getObjectPropertyDomains(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe,
                                                                                                               boolean direct)
                                                                                                        throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                               org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                               org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                               org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getObjectPropertyDomains in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getObjectPropertyRanges

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getObjectPropertyRanges(org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe,
                                                                                                              boolean direct)
                                                                                                       throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                              org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                              org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                              org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getObjectPropertyRanges in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getTopDataPropertyNode

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLDataProperty> getTopDataPropertyNode()

Specified by:

getTopDataPropertyNode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getBottomDataPropertyNode

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLDataProperty> getBottomDataPropertyNode()

Specified by:

getBottomDataPropertyNode in interface org.semanticweb.owlapi.reasoner.OWLReasoner

getSubDataProperties

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLDataProperty> getSubDataProperties(org.semanticweb.owlapi.model.OWLDataProperty pe,
                                                                                                                  boolean direct)
                                                                                                           throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                  org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                  org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                  org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getSubDataProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getSuperDataProperties

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLDataProperty> getSuperDataProperties(org.semanticweb.owlapi.model.OWLDataProperty pe,
                                                                                                                    boolean direct)
                                                                                                             throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                    org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                    org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                    org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getSuperDataProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getEquivalentDataProperties

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLDataProperty> getEquivalentDataProperties(org.semanticweb.owlapi.model.OWLDataProperty pe)
                                                                                                               throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                      org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                      org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                      org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getEquivalentDataProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getDisjointDataProperties

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLDataProperty> getDisjointDataProperties(org.semanticweb.owlapi.model.OWLDataPropertyExpression pe)
                                                                                                                throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                       org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                       org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                       org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getDisjointDataProperties in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getDataPropertyDomains

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getDataPropertyDomains(org.semanticweb.owlapi.model.OWLDataProperty pe,
                                                                                                             boolean direct)
                                                                                                      throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                             org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                             org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                             org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getDataPropertyDomains in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getTypes

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLClass> getTypes(org.semanticweb.owlapi.model.OWLNamedIndividual ind,
                                                                                               boolean direct)
                                                                                        throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                               org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                               org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                               org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getTypes in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getInstances

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLNamedIndividual> getInstances(org.semanticweb.owlapi.model.OWLClassExpression ce,
                                                                                                             boolean direct)
                                                                                                      throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                             org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException,
                                                                                                             org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                             org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                             org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getInstances in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.ClassExpressionNotInProfileException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getObjectPropertyValues

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLNamedIndividual> getObjectPropertyValues(org.semanticweb.owlapi.model.OWLNamedIndividual ind,
                                                                                                                        org.semanticweb.owlapi.model.OWLObjectPropertyExpression pe)
                                                                                                                 throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                        org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                        org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                        org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getObjectPropertyValues in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getDataPropertyValues

public Set<org.semanticweb.owlapi.model.OWLLiteral> getDataPropertyValues(org.semanticweb.owlapi.model.OWLNamedIndividual ind,
                                                                          org.semanticweb.owlapi.model.OWLDataProperty pe)
                                                                   throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                          org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                          org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                          org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getDataPropertyValues in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getSameIndividuals

public org.semanticweb.owlapi.reasoner.Node<org.semanticweb.owlapi.model.OWLNamedIndividual> getSameIndividuals(org.semanticweb.owlapi.model.OWLNamedIndividual ind)
                                                                                                         throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getSameIndividuals in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getDifferentIndividuals

public org.semanticweb.owlapi.reasoner.NodeSet<org.semanticweb.owlapi.model.OWLNamedIndividual> getDifferentIndividuals(org.semanticweb.owlapi.model.OWLNamedIndividual ind)
                                                                                                                 throws org.semanticweb.owlapi.reasoner.InconsistentOntologyException,
                                                                                                                        org.semanticweb.owlapi.reasoner.FreshEntitiesException,
                                                                                                                        org.semanticweb.owlapi.reasoner.ReasonerInterruptedException,
                                                                                                                        org.semanticweb.owlapi.reasoner.TimeOutException

Specified by:

getDifferentIndividuals in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Throws:

org.semanticweb.owlapi.reasoner.InconsistentOntologyException

org.semanticweb.owlapi.reasoner.FreshEntitiesException

org.semanticweb.owlapi.reasoner.ReasonerInterruptedException

org.semanticweb.owlapi.reasoner.TimeOutException

getTimeOut

public long getTimeOut()

Specified by:

getTimeOut in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getTimeOut in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getFreshEntityPolicy

public org.semanticweb.owlapi.reasoner.FreshEntityPolicy getFreshEntityPolicy()

Specified by:

getFreshEntityPolicy in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getFreshEntityPolicy in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

getIndividualNodeSetPolicy

public org.semanticweb.owlapi.reasoner.IndividualNodeSetPolicy getIndividualNodeSetPolicy()

Specified by:

getIndividualNodeSetPolicy in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

getIndividualNodeSetPolicy in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

dispose

public void dispose()

Specified by:

dispose in interface org.semanticweb.owlapi.reasoner.OWLReasoner

Overrides:

dispose in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase

handleChanges

protected void handleChanges(Set<org.semanticweb.owlapi.model.OWLAxiom> addAxioms,
                             Set<org.semanticweb.owlapi.model.OWLAxiom> removeAxioms)

Specified by:

handleChanges in class org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase