Object

org.bdgenomics.adam.rdd.variant

VCFInFormatter

Related Doc: package variant

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object VCFInFormatter extends InFormatterCompanion[VariantContext, VariantContextRDD, VCFInFormatter] with Serializable

InFormatter companion that builds a VCFInFormatter to write VCF to a pipe.

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Serializable, Serializable, InFormatterCompanion[VariantContext, VariantContextRDD, VCFInFormatter], AnyRef, Any
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  1. VCFInFormatter
  2. Serializable
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  4. InFormatterCompanion
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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(gRdd: VariantContextRDD): VCFInFormatter

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    Apply method for building the VCFInFormatter from a VariantContextRDD.

    Apply method for building the VCFInFormatter from a VariantContextRDD.

    gRdd

    VariantContextRDD to build VCF header from.

    returns

    A constructed VCFInFormatter with all needed metadata to write a VCF header.

    Definition Classes
    VCFInFormatter → InFormatterCompanion

  5. final def asInstanceOf[T0]: T0

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  6. def clone(): AnyRef

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  7. final def eq(arg0: AnyRef): Boolean

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  8. def equals(arg0: Any): Boolean

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  9. def finalize(): Unit

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  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. final def ne(arg0: AnyRef): Boolean

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  14. final def notify(): Unit

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  15. final def notifyAll(): Unit

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  16. final def synchronized[T0](arg0: ⇒ T0): T0

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  17. def toString(): String

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  18. final def wait(): Unit

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  19. final def wait(arg0: Long, arg1: Int): Unit

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  20. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from InFormatterCompanion[VariantContext, VariantContextRDD, VCFInFormatter]

Inherited from AnyRef

Inherited from Any

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