org
.
hammerlab
.
bam
.
check
PosMetadata
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class PosMetadata
|
package check
object
PosMetadata
extends
Serializable
Linear Supertypes
Serializable
,
Serializable
,
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PosMetadata
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final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
##
()
:
Int
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
implicit
val
alsoRegister
:
AlsoRegister
[
PosMetadata
]
def
apply
(
pos:
Pos
,
flags:
Flags
)
(
implicit
uncompressedBytes:
SeekableUncompressedBytes
,
header:
Broadcast
[
Header
]
,
readsToCheck:
ReadsToCheck
,
maxReadSize:
MaxReadSize
)
:
PosMetadata
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
implicit
def
defaultShow
(
implicit
showRecord:
hammerlab.show.Show
[
SAMRecord
]
)
:
hammerlab.show.Show
[
PosMetadata
]
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
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def
hashCode
()
:
Int
Definition Classes
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final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
recordPos
(
record:
SAMRecord
)
(
implicit
contigLengths:
ContigLengths
)
:
String
implicit
def
showNextRecordOpt
(
implicit
showNextRecord:
hammerlab.show.Show
[
NextRecord
]
)
:
hammerlab.show.Show
[
Option
[
NextRecord
]]
implicit
def
showRecord
(
implicit
contigLengths:
ContigLengths
)
:
hammerlab.show.Show
[
SAMRecord
]
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
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def
toString
()
:
String
Definition Classes
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final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
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