sealed
trait
ParsedLoci extends Any
Abstract Value Members
-
abstract
def
getClass(): Class[_]
Concrete Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
-
final
def
asInstanceOf[T0]: T0
-
def
equals(arg0: Any): Boolean
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def
hashCode(): Int
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final
def
isInstanceOf[T0]: Boolean
-
def
toString(): String
Representation of genomic-loci ranges that may be used to instantiate a org.hammerlab.genomics.loci.set.LociSet.
Constituent ranges can be open-ended, so a ParsedLoci is typically a short-lived intermediate representation between String representations of ranges (possibly originating from cmdline-flags or a file) and a org.hammerlab.genomics.loci.set.LociSet whose open-ended ranges have been "resolved" using contig-length information found in a BAM header.
The two implementations are:
Examples: