org.hammerlab.genomics.loci.set

LociSet

object LociSet extends Serializable

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  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. def all(contigLengths: ContigLengths): LociSet

  7. def apply(ranges: ParsedLoci, contigLengths: ContigLengths): LociSet

  8. def apply(regions: Iterable[Region]): LociSet

  9. def apply(): LociSet

    An empty LociSet.

  10. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  11. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( ... )

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( classOf[java.lang.Throwable] )

  15. def fromContigs(contigs: Iterator[Contig]): LociSet

  16. def fromContigs(contigs: Iterable[Contig]): LociSet

    These constructors build a LociSet directly from Contigs.

    These constructors build a LociSet directly from Contigs.

    They operate on an Iterator so that transformations to the data happen in one pass.

  17. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  18. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  19. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  20. final def ne(arg0: AnyRef): Boolean

    Definition Classes
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  21. final def notify(): Unit

    Definition Classes
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  22. final def notifyAll(): Unit

    Definition Classes
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  23. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  24. def toString(): String

    Definition Classes
    AnyRef → Any

  25. final def wait(): Unit

    Definition Classes
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    @throws( ... )

  26. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
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    @throws( ... )

  27. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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