Trait/Object

org.hammerlab.genomics.reference

Interval

Related Docs: object Interval | package reference

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trait Interval extends Ordered[Interval]

Linear Supertypes
Ordered[Interval], Comparable[Interval], AnyRef, Any
Known Subclasses
Position, Region, Slice, TestRegion
Ordering
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  2. By Inheritance
Inherited
  1. Interval
  2. Ordered
  3. Comparable
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Abstract Value Members

  1. abstract def end: Locus

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    The end position on the genome, *exclusive*.

    The end position on the genome, *exclusive*. Must be non-negative.

  2. abstract def start: Locus

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    Start position on the genome, inclusive.

    Start position on the genome, inclusive. Must be non-negative.

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def <(that: Interval): Boolean

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    Definition Classes
    Ordered

  4. def <=(that: Interval): Boolean

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    Definition Classes
    Ordered

  5. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  6. def >(that: Interval): Boolean

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    Definition Classes
    Ordered

  7. def >=(that: Interval): Boolean

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    Definition Classes
    Ordered

  8. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  9. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  10. def compare(other: Interval): Int

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    Comparisons between ranges.

    Comparisons between ranges. Order is DESCENDING (i.e. reversed) from by start.

    Definition Classes
    Interval → Ordered

  11. def compareTo(that: Interval): Int

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    Definition Classes
    Ordered → Comparable

  12. def contains(locus: Locus): Boolean

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  13. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  14. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  15. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  17. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  18. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  19. def iterator(): Iterator[Long]

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    Iterate through elements in the range.

  20. def length: NumLoci

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    Number of elements in the range.

  21. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  22. final def notify(): Unit

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    Definition Classes
    AnyRef

  23. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  24. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  25. def toString(): String

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    Definition Classes
    AnyRef → Any

  26. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Ordered[Interval]

Inherited from Comparable[Interval]

Inherited from AnyRef

Inherited from Any

Ungrouped