TestRegion

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. def <(that: Interval): Boolean

   

   Definition Classes

   Ordered

4. def <=(that: Interval): Boolean

   

   Definition Classes

   Ordered

5. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

6. def >(that: Interval): Boolean

   

   Definition Classes

   Ordered

7. def >=(that: Interval): Boolean

   

   Definition Classes

   Ordered

8. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

9. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

10. def compare(other: Interval): Int

    

    Comparisons between ranges.

    Comparisons between ranges. Order is DESCENDING (i.e. reversed) from by start.

    Definition Classes

    Interval → Ordered

11. def compareTo(that: Interval): Int

    

    Definition Classes

    Ordered → Comparable

12. def contains(locus: Locus): Boolean

    

    Definition Classes

    Interval

13. val contigName: ContigName

    

    Definition Classes

    TestRegion → HasContig

14. val end: Long

    

    The end position on the genome, *exclusive*.

    The end position on the genome, *exclusive*. Must be non-negative.

    Definition Classes

    TestRegion → Interval

15. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

16. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

17. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

18. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

19. def iterator(): Iterator[Long]

    

    Iterate through elements in the range.

    Iterate through elements in the range.

    Definition Classes

    Interval

20. def length: NumLoci

    

    Number of elements in the range.

    Number of elements in the range.

    Definition Classes

    Interval

21. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

22. final def notify(): Unit

    

    Definition Classes

    AnyRef

23. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

24. def overlaps(other: Region): Boolean

    

    Does the region overlap another reference region

    Does the region overlap another reference region

    other

    another region on the genome

    returns

    True if the the regions overlap

    Definition Classes

    Region

25. def overlapsLocus(locus: Locus, halfWindowSize: Int = 0): Boolean

    

    Does the region overlap the given locus, with halfWindowSize padding?

    Does the region overlap the given locus, with halfWindowSize padding?

    Definition Classes

    Region

26. def regionStr: String

    

    Definition Classes

    Region

27. val start: Long

    

    Start position on the genome, inclusive.

    Start position on the genome, inclusive. Must be non-negative.

    Definition Classes

    TestRegion → Interval

28. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

29. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

30. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

31. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )