Class/Object

org.hammerlab.genomics.bases

Bases

Related Docs: object Bases | package bases

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final class Bases extends AnyVal with BasesBuffer

Bases wraps a Vector[Byte] where each Byte holds the ASCII value of one of 5 values: A, C, G, T, N.

Linear Supertypes
BasesBuffer, AnyVal, Any
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Inherited
  1. Bases
  2. BasesBuffer
  3. AnyVal
  4. Any
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Visibility
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Type Members

  1. type LengthT = Int

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    Definition Classes
    Bases → BasesBuffer

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    Any

  2. final def ##(): Int

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    Definition Classes
    Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    Any

  4. def allStandardBases: Boolean

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    Are all the given bases standard?

  5. def apply(idx: LengthT): Base

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    Definition Classes
    Bases → BasesBuffer

  6. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  7. val bytes: Bytes

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  8. def complement: Bases

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    Watson-Crick complement of a sequence of bases.

  9. def getClass(): Class[_ <: AnyVal]

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    Definition Classes
    AnyVal → Any

  10. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  11. def length: LengthT

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    Definition Classes
    Bases → BasesBuffer

  12. def reverseComplement: Bases

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    Watson-Crick complement of a sequence of bases, with the sequence reversed.

  13. def toString(): String

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    Definition Classes
    Bases → Any

Inherited from BasesBuffer

Inherited from AnyVal

Inherited from Any

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