Trait

org.hammerlab.genomics.bases

BasesBuffer

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trait BasesBuffer extends Any

Interface for buffers of DNA/RNA bases; subclasses can specialize the length to e.g. Int (for run-of-the-mill read-processing needs) or Long (for storing whole reference contigs).

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Type Members

  1. abstract type LengthT

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Abstract Value Members

  1. abstract def apply(idx: LengthT): Base

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  2. abstract def getClass(): Class[_]

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  3. abstract def length: LengthT

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Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def equals(arg0: Any): Boolean

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  6. def hashCode(): Int

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  7. final def isInstanceOf[T0]: Boolean

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  8. def toString(): String

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