bases

Type Members

1. final class Base extends AnyVal

   

2. final class Bases extends AnyVal with BasesBuffer with IndexedSeqLike[Base, Bases]

   

   Bases wraps a Vector[Byte] where each Byte holds the ASCII value of one of 5 values: A, C, G, T, N.

3. trait BasesBuffer extends Any

   

   Interface for buffers of DNA/RNA bases; subclasses can specialize the length to e.g.

   Interface for buffers of DNA/RNA bases; subclasses can specialize the length to e.g. Int (for run-of-the-mill read-processing needs) or Long (for storing whole reference contigs).

4. class BasesSerializer extends Serializer[Bases]

   

5. class Registrar extends KryoRegistrator