1. cern
   1. cern.colt
      1. (class)Arrays
      2. (class)GenericSorting
      3. (class)Math
      4. (class)PersistentObject
      5. (trait)Swapper
      1. cern.colt.function
         1. (trait)BooleanProcedure
         2. (trait)ByteComparator
         3. (trait)ByteProcedure
         4. (trait)CharProcedure
         5. (trait)Double27Function
         6. (trait)Double5Function
         7. (trait)Double9Function
         8. (trait)DoubleComparator
         9. (trait)DoubleDoubleFunction
         10. (trait)DoubleDoubleProcedure
         11. (trait)DoubleFunction
         12. (trait)DoubleIntProcedure
         13. (trait)DoubleProcedure
         14. (trait)FloatProcedure
         15. (trait)IntComparator
         16. (trait)IntDoubleFunction
         17. (trait)IntDoubleProcedure
         18. (trait)IntFunction
         19. (trait)IntIntDoubleFunction
         20. (trait)IntIntDoubleProcedure
         21. (trait)IntIntFunction
         22. (trait)IntIntIntProcedure
         23. (trait)IntIntProcedure
         24. (trait)IntObjectProcedure
         25. (trait)IntProcedure
         26. (trait)LongComparator
         27. (trait)LongIntProcedure
         28. (trait)LongLongProcedure
         29. (trait)LongObjectProcedure
         30. (trait)LongProcedure
         31. (trait)ObjectFunction
         32. (trait)ObjectObjectFunction
         33. (trait)ObjectProcedure
         34. (trait)ShortProcedure
      2. cern.colt.list
         1. (class)AbstractBooleanList
         2. (class)AbstractByteList
         3. (class)AbstractCollection
         4. (class)AbstractDoubleList
         5. (class)AbstractIntList
         6. (class)AbstractList
         7. (class)AbstractLongList
         8. (class)BooleanArrayList
         9. (class)ByteArrayList
         10. (class)DoubleArrayList
         11. (class)IntArrayList
         12. (class)LongArrayList
         13. (class)ObjectArrayList
      3. cern.colt.map
         1. (class)AbstractIntDoubleMap
         2. (class)AbstractIntIntMap
         3. (class)AbstractIntObjectMap
         4. (class)AbstractLongIntMap
         5. (class)AbstractLongObjectMap
         6. (class)AbstractMap
         7. (class)HashFunctions
         8. (class)OpenIntDoubleHashMap
         9. (class)OpenIntIntHashMap
         10. (class)OpenIntObjectHashMap
         11. (class)OpenLongIntHashMap
         12. (class)OpenLongObjectHashMap
         13. (class)PrimeFinder
2. org
   1. org.mitre
      1. org.mitre.jcarafe
         1. org.mitre.jcarafe.crf
            1. (class)AbstractInstance
            2. (class)AbstractValuedFeatureType
            3. (class)AbstractViterbi
            4. (trait)AccessSeq
            5. (class)Alphabet
            6. (class)AlphabetWithSpecialCases
            7. (class)BasicDecoder
            8. (class)BasicSeqDeserialization
            9. (trait)BasicSeqGen
            10. (object)(class)BloomFilter
            11. (class)BloomFilterBuilder
            12. (class)BloomLexicon
            13. (object)(class)BuiltFeature
            14. (class)BuiltFeatureDebug
            15. (class)CompactFeature
            16. (object)(class)CompiledCrfInstance
            17. (trait)CondLogLikelihoodLearner
            18. (class)CoreModel
            19. (class)CoreModelSerializer
            20. (object)(class)Crf
            21. (object)(class)CrfInstance
            22. (trait)CrfLearner
            23. (object)(class)Decoder
            24. (object)(class)DecoderPipeline
            25. (class)DecodingAlgorithm
            26. (class)DecodingFactoredFeatureRep
            27. (class)DecodingNonFactoredFeatureRep
            28. (class)DecodingSeqGen
            29. (class)DenseCrf
            30. (class)DenseCRFConfidences
            31. (class)DenseCrfWorker
            32. (class)DenseGeneralizedEMCrf
            33. (class)DenseGeneralizedEMCrfWorker
            34. (class)DenseParallelCrf
            35. (class)DenseParallelGeneralizedEMCrf
            36. (class)DenseSemiCrf
            37. (class)DenseStatelessCrf
            38. (trait)DenseTrainable
            39. (trait)DenseWorker
            40. (class)Deserialization
            41. (object)(class)DirectDecoder
            42. (object)(class)DirectSeqDeserialization
            43. (trait)DirectSeqGen
            44. (class)DirectTrainingSeqGen
            45. (class)DiskAccessSeq
            46. (class)DiskInstanceSequence
            47. (class)DynamicFeatureManagerBuilder
            48. (class)DynamicRecodeFeatureManager
            49. (class)FactoredCachedSourceSequence
            50. (class)FactoredDecoder
            51. (class)FactoredDecodingSeqGen
            52. (class)FactoredFeatureRep
            53. (trait)FactoredSeqGen
            54. (class)FactoredTrainer
            55. (class)FastNonFactoredCrfInstance
            56. (class)Feature
            57. (class)FeatureCat
            58. (class)FeatureCore
            59. (object)(class)FeatureFn
            60. (object)
                FeatureHashMixer
            61. (class)FeatureManager
            62. (object)(class)FeatureManagerBuilder
            63. (class)FeatureRep
            64. (object)(class)FeatureReturn
            65. (class)FeatureType
            66. (trait)GeneralizedEMCrf
            67. (class)GenericNonFactoredTrainer
            68. (class)HashLexicon
            69. (object)
                IncrementalMurmurHash
            70. (object)(class)InducedFeatureMap
            71. (object)
                InducedFeatureMapProtocol
            72. (class)InstanceSequence
            73. (object)
                InstanceSerializations
            74. (object)
                InstSeq
            75. (class)JsonDecoder
            76. (class)JsonSeqDeserialization
            77. (trait)JsonSeqGen
            78. (class)KLDivMinimizingCrf
            79. (class)KLDivMinimizingStochasticCrf
            80. (trait)Lexicon
            81. (trait)LinearCRFTraining
            82. (class)LongAlphabet
            83. (class)MaxEntModel
            84. (object)
                MaxEntSerializer
            85. (class)MemoryAccessSeq
            86. (class)MemoryInstanceSequence
            87. (object)(class)Model
            88. (case class)ModelAuxiliaries
            89. (case class)ModelMetaData
            90. (object)
                MultiFeature
            91. (class)NBinFeature
            92. (object)
                NeuralCrf
            93. (class)NeuralDenseCrf
            94. (class)NeuralDenseCrfWorker
            95. (class)NeuralDenseParallelCrf
            96. (class)NeuralStochasticCrf
            97. (trait)NeuralStochasticCrfScoring
            98. (class)NeuralViterbi
            99. (object)
                NNFeature
            100. (class)NonFactoredCachedSourceSequence
            101. (class)NonFactoredCrfInstance
            102. (class)NonFactoredDecoder
            103. (class)NonFactoredDecodingSeqGen
            104. (class)NonFactoredFeatureManager
            105. (class)NonFactoredFeatureRep
            106. (class)NonFactoredModel
            107. (class)NonFactoredPreFeature
            108. (object)
                 NonFactoredSerializer
            109. (class)NonFactoredTrainer
            110. (class)NonFactoredTrainingSeqGen
            111. (class)ObsSource
            112. (trait)ParallelStochastic
            113. (trait)ParCrf
            114. (trait)PotentialScoring
            115. (case class)PreFeature
            116. (trait)PsaLearner
            117. (trait)PsaLearnerWithL1
            118. (class)RandomLongAlphabet
            119. (class)RandomNonFactoredModel
            120. (class)RandomStdModel
            121. (class)RecodedObsSource
            122. (case class)SectionUpdate
            123. (class)SelfInducibleCrfInstance
            124. (class)SelfInducibleDecodingFactoredFeatureRep
            125. (trait)SemiCrf
            126. (class)SemiRandomFsetMapping
            127. (class)SemiRandomFsetMappingOptimized
            128. (class)SeqElement
            129. (class)SeqGen
            130. (trait)SeqGenScorer
            131. (trait)SequenceTrainable
            132. (trait)SeqXValidator
            133. (trait)SgdLearner
            134. (trait)SgdLearnerWithL1
            135. (class)SourceSequence
            136. (class)SparseStatelessCrf
            137. (class)SparseStatelessKLDivMinimizingCrf
            138. (trait)SparseTrainable
            139. (object)
                 StandardSerializer
            140. (class)StatelessViterbi
            141. (class)StaticFeatureManagerBuilder
            142. (class)StdDecoder
            143. (object)
                 StdFeature
            144. (class)StdModel
            145. (class)StdTrainer
            146. (class)StochasticCrf
            147. (class)StochasticGeneralizedEMCrf
            148. (class)StochasticSemiCrf
            149. (object)
                 TagParser
            150. (class)TextDecoder
            151. (class)TextSeqDeserialization
            152. (trait)TextSeqGen
            153. (trait)Trainable
            154. (class)Trainer
            155. (class)TrainingFactoredFeatureRep
            156. (class)TrainingSeqGen
            157. (class)ValuedFeatureType
            158. (class)ValuedRandomFeatureType
            159. (object)(class)Viterbi
            160. (object)(class)WordProperties
            161. (class)WordScores
            162. (trait)XmlConversions
            163. (class)XmlSeqDeserialization
            164. (trait)XmlSeqGen
         2. org.mitre.jcarafe.jama
            1. (class)CholeskyDecomposition
            2. (class)EigenvalueDecomposition
            3. (class)LUDecomposition
            4. (class)Maths
            5. (class)Matrix
            6. (class)QRDecomposition
            7. (class)SingularValueDecomposition
         3. org.mitre.jcarafe.jarafe
            1. (class)DocumentClassifier
            2. (class)DocumentClassifierTrainer
            3. (class)Jarafe
            4. (class)JarafeMEDecoder
            5. (class)JarafeMETrainer
            6. (class)JarafeTagger
            7. (class)JarafeTokenizer
            8. (class)JarafeXValidator
            9. (class)JCarafeDirectDecoder
            10. (class)SeqElement
            11. (class)StringDoublePair
         4. org.mitre.jcarafe.lexer
            1. (class)GenToker
            2. (trait)GenTokerConstants
            3. (class)GenTokerTokenManager
            4. (class)JsonToker
            5. (trait)JsonTokerConstants
            6. (class)JsonTokerTokenManager
            7. (class)ParseException
            8. (class)SimpleCharStream
            9. (class)Token
            10. (class)TokenMgrError
            11. (class)WhiteSpaceToker
            12. (class)WhiteSpaceToker2
            13. (trait)WhiteSpaceToker2Constants
            14. (class)WhiteSpaceToker2TokenManager
            15. (trait)WhiteSpaceTokerConstants
            16. (class)WhiteSpaceTokerTokenManager
            17. (class)WhiteTagToker
            18. (trait)WhiteTagTokerConstants
            19. (class)WhiteTagTokerTokenManager
         5. org.mitre.jcarafe.maxent
            1. (object)
               AnalyzeFeatures
            2. (object)
               ConvertSparseToDense
            3. (object)
               ConvertToIntegers
            4. (class)DenseMaxEntWorker
            5. (class)DenseParallelMaxEnt
            6. (class)DiskBasedMaxEntTrainer
            7. (class)DiskBasedMaxEntTrainingSeqGen
            8. (class)Evaluator
            9. (class)FeatureAnalyzer
            10. (object)(class)FeatureId
            11. (class)FileBasedMaxEntDecodeSeqGen
            12. (class)FileBasedMaxEntTrainingSeqGen
            13. (class)MaxEnt
            14. (object)(class)MaxEntClassifier
            15. (object)
                MaxEntClassifierMain
            16. (trait)MaxEntCore
            17. (object)(class)MaxEntDecoder
            18. (class)MaxEntDecodeSeqGen
            19. (class)MaxEntDecodingAlgorithm
            20. (class)MaxEntDeserialization
            21. (class)MaxEntDiskAccessSeq
            22. (class)MaxEntFeatureType
            23. (class)MaxEntInstance
            24. (class)MaxEntMemoryAccessSeq
            25. (class)MaxEntOptionHandler
            26. (trait)MaxEntSeqGen
            27. (trait)MaxEntSeqGenAttVal
            28. (trait)MaxEntSeqGenAttValFromFileProcessor
            29. (trait)MaxEntSeqGenCore
            30. (trait)MaxEntSeqGenGeneral
            31. (class)MaxEntTrainer
            32. (class)MaxEntTrainingSeqGen
            33. (object)
                ME
            34. (class)MEFRep
            35. (class)MEOptions
            36. (object)
                MERank
            37. (object)
                MESerializations
            38. (class)NonFactoredMaxEnt
            39. (class)NonFactoredMaxEntClassifier
            40. (trait)NonFactoredMaxEntCore
            41. (class)NonFactoredMaxEntDecodingAlgorithm
            42. (class)NonFactoredRankDecodingSeqGen
            43. (class)NonFactoredRankTrainingSeqGen
            44. (trait)NonFactoredSeqGen
            45. (class)PosteriorMaxEntDecoder
            46. (class)RankInstance
            47. (class)RankReadInst
            48. (object)(class)RuntimeMaxEntDecoder
            49. (object)(class)RunTimeMaxEntDocumentDecoder
            50. (class)RunTimeMaxEntDocumentTrainer
            51. (class)RuntimeMaxEntTrainer
            52. (object)
                RunTimeOptions
            53. (class)SelfInducableMaxEntInstance
            54. (class)SelfInducibleMaxEntInstance
            55. (class)SelfInducibleMEFRep
            56. (class)SemiSupervisedMaxEntClassifier
            57. (class)SparseMaxEnt
            58. (class)SparseStatelessMaxEnt
            59. (class)SparseToDenseMapper
            60. (object)
                TestGradients
         6. org.mitre.jcarafe.optimize
            1. (object)
               AlreadyMinimized
            2. (class)BackTrackingLineSearch
            3. (class)Cell
            4. (class)ConvexOptimizer
            5. (object)
               ErrCanceled
            6. (object)
               ErrIncorrectTminmax
            7. (object)
               ErrIncreasegradient
            8. (object)
               ErrInvalidDelta
            9. (object)
               ErrInvalidEpsilon
            10. (object)
                ErrInvalidFtol
            11. (object)
                ErrInvalidGtol
            12. (object)
                ErrInvalidLinesearch
            13. (object)
                ErrInvalidMaxlinesearch
            14. (object)
                ErrInvalidMaxstep
            15. (object)
                ErrInvalidMinstep
            16. (object)
                ErrInvalidN
            17. (object)
                ErrInvalidNSse
            18. (object)
                ErrInvalidOrthantwise
            19. (object)
                ErrInvalidOrthantwiseEnd
            20. (object)
                ErrInvalidOrthantwiseStart
            21. (object)
                ErrInvalidparameters
            22. (object)
                ErrInvalidTestperiod
            23. (object)
                ErrInvalidWolfe
            24. (object)
                ErrInvalidXSse
            25. (object)
                ErrInvalidXtol
            26. (object)
                ErrLogicerror
            27. (object)
                ErrMaximumlinesearch
            28. (object)
                ErrMaximumstep
            29. (object)
                ErrMinimumstep
            30. (object)
                ErrOutofinterval
            31. (object)
                ErrOutofmemory
            32. (object)
                ErrRoundingError
            33. (object)
                ErrUnknownerror
            34. (object)
                ErrWidthtoosmall
            35. (class)FunctionEvaluation
            36. (class)LbfgsOptimizer
            37. (class)LineSearch
            38. (class)LineSearchAlg
            39. (object)
                LineSearchBacktracking
            40. (object)
                LineSearchBacktrackingArmijo
            41. (object)
                LineSearchBacktrackingWolfe
            42. (object)
                LineSearchMoreThuente
            43. (object)
                MaximumIteration
            44. (object)
                NotStarted
            45. (class)Numerical
            46. (object)(class)OptimizerStatus
            47. (class)Params
            48. (case class)Result
            49. (object)
                Stopped
            50. (object)
                Success
         7. org.mitre.jcarafe.semisupervised
            1. (object)
               DumpFeatureMap
            2. (class)PosteriorCrf
            3. (class)PosteriorDecoder
            4. (class)PosteriorTaggerTask
            5. (object)
               PosteriorTaggerTaskMain
         8. org.mitre.jcarafe.tagger
            1. (object)
               Basic
            2. (object)
               GenericTagger
            3. (object)
               Json
            4. (class)Mode
            5. (class)SemiSupervisedTaggerTask
            6. (class)StdTaggerTask
            7. (object)(class)TaggerTask
            8. (object)
               Text
            9. (class)UtteranceLabelingTask
         9. org.mitre.jcarafe.tokenizer
            1. (case class)Category
            2. (object)
               CharStr
            3. (case class)ComplexTok
            4. (class)Element
            5. (case class)EndWs
            6. (object)
               FastTokenizer
            7. (case class)HardEndTok
            8. (case class)IgnoreBlock
            9. (case class)Matching
            10. (class)MergePatternSequence
            11. (object)(class)MergeTokenizerAugmenterPattern
            12. (object)
                MoveAnnotations
            13. (class)PatternElement
            14. (class)PatternSequence
            15. (case class)R
            16. (object)
                RawTokenizer
            17. (object)
                Recurse
            18. (case class)Rep
            19. (case class)S
            20. (case class)SoftEndTok
            21. (class)SplitPatternSequence
            22. (object)(class)SplitTokenizerAugmenterPattern
            23. (case class)Tag
            24. (object)
                Tk
            25. (case class)Tok
            26. (class)Tokenizer
            27. (class)TokenizerAugmenterPattern
            28. (class)TokenizerOptions
            29. (class)TokenizerPatternParser
            30. (object)(class)TokenTagUpcaseTransmuter
            31. (class)TokenTransmuter
            32. (object)
                WhiteSpaceTokenizer
            33. (case class)Ws
         10. org.mitre.jcarafe.util
             1. (class)AbstractLabel
             2. (class)AbstractSparseVector
             3. (case class)AlignSeq
             4. (class)Annotation
             5. (class)BaseOptionHandler
             6. (case class)BeginState
             7. (class)CommandLineHandler
             8. (object)
                ComputeTFIDFTable
             9. (object)
                ConvertCoNLLFormat
             10. (object)
                 ConvertInlineToJson
             11. (object)
                 ConvertIOBToLex
             12. (object)
                 ConvertJsonToInline
             13. (object)
                 ConvertToMEFormat
             14. (object)
                 FastLoops
             15. (class)IdfStats
             16. (case class)ILabel
             17. (case class)JsArray
             18. (case class)JsDouble
             19. (object)
                 JsFalse
             20. (case class)JsInt
             21. (object)
                 JsNull
             22. (case class)JsObject
             23. (object)
                 Json
             24. (object)
                 JsonAnnotationHandler
             25. (class)JsonType
             26. (case class)JsString
             27. (object)
                 JsTrue
             28. (case class)Label
             29. (object)
                 MapTokenAttributes
             30. (object)(class)MapZhTreeBankToUniversal
             31. (class)OptionHandler
             32. (class)Options
             33. (object)
                 PrimeNumbers
             34. (class)ProjectAligned
             35. (object)
                 ProjectAlignedAttributes
             36. (object)(class)ProjectAlignedTags
             37. (class)ProjectAlignedTokenAttributes
             38. (case class)PropertyVal
             39. (object)
                 SeparateDocs
             40. (case class)SLabel
             41. (object)(class)SparseVector
             42. (class)SparseVectorAsMap
             43. (object)
                 StripTags
             44. (object)(class)Tagset
             45. (object)
                 TestSerializationDirect
             46. (object)
                 TestSparseVec
             47. (class)TFIDFOptions
             48. (class)Token
             49. (case class)UncertainLabel
             50. (object)(class)WeightedTagset