org.obolibrary.robot

Class PythonCommand

java.lang.Object

org.obolibrary.robot.PythonCommand

All Implemented Interfaces:

Command

public class PythonCommand
extends Object
implements Command

Starts a gateway server for Py4J to execute ROBOT operations via Python.

Author:

Becky Jackson

Field Summary

Fields inherited from interface org.obolibrary.robot.Command

global, missingFileError

Constructor Summary

Constructors

Constructor and Description
PythonCommand() Initialize the command.

Method Summary

Modifier and Type	Method and Description
CommandState	execute(CommandState state, String[] args) Runs ROBOT accessible via Python.
String	getDescription() Brief description of the command.
String	getName() Name of the command.
org.apache.commons.cli.Options	getOptions() Command-line options for the command.
String	getUsage() Command-line usage for the command.
void	main(String[] args) Handle the command-line and file operations for the ReasonOperation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PythonCommand

public PythonCommand()

Initialize the command.

Method Detail

getName

public String getName()

Name of the command.

Specified by:

getName in interface Command

Returns:

name

getDescription

public String getDescription()

Brief description of the command.

Specified by:

getDescription in interface Command

Returns:

description

getUsage

public String getUsage()

Command-line usage for the command.

Specified by:

getUsage in interface Command

Returns:

usage

getOptions

public org.apache.commons.cli.Options getOptions()

Command-line options for the command.

Specified by:

getOptions in interface Command

Returns:

options

main

public void main(String[] args)

Handle the command-line and file operations for the ReasonOperation.

Specified by:

main in interface Command

Parameters:

args - strings to use as arguments

execute

public CommandState execute(CommandState state,
                            String[] args)
                     throws Exception

Runs ROBOT accessible via Python.

Specified by:

execute in interface Command

Parameters:

state - the state from the previous command, or null

args - the command-line arguments

Returns:

the input state unchanged, or a new state with the ontology

Throws:

Exception - on any problem