| AbstractNIOHandle |
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
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| ByteArrayHandle |
A wrapper for a byte array that implements the IRandomAccess interface.
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| BZip2Handle |
StreamHandle implementation for reading from BZip2-compressed files
or byte arrays.
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| CaseInsensitiveLocation |
Deprecated.
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| CBZip2InputStream |
An input stream that decompresses from the BZip2 format (without the file
header chars) to be read as any other stream.
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| Constants |
Constants that are used within many classes in loci.common.
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| CRC |
A simple class to hold and calculate the CRC for sanity checking the data.
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| DataTools |
A utility class with convenience methods for
reading, writing and decoding words.
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| DateTools |
A utility class with convenience methods for working with dates.
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| DebugTools |
A utility class with convenience methods for debugging.
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| FileHandle |
A wrapper for RandomAccessFile that implements the IRandomAccess interface.
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| GZipHandle |
StreamHandle implementation for reading from gzip-compressed files
or byte arrays.
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| IniList |
A data structure containing a parsed list of INI key/value tables.
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| IniParser |
A simple parser for INI configuration files.
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| IniTable |
A data structure containing a parsed list of INI key/value tables.
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| IniWriter |
A simple writer for INI configuration files.
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| Location |
Pseudo-extension of File that supports reading over HTTP
(among other things).
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| Log4jTools |
A utility class with convenience methods for log4j.
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| LogbackTools |
A utility class with convenience methods for logback.
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| NIOByteBufferProvider |
Provides a facade to byte buffer allocation that enables
FileChannel.map() usage on platforms where it's unlikely to
give us problems and heap allocation where it is.
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| NIOFileHandle |
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
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| NIOInputStream |
NIOInputStream provides methods for "intelligent" reading of files
and byte arrays.
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| RandomAccessInputStream |
Top-level class for reading from various data sources.
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| RandomAccessOutputStream |
RandomAccessOutputStream provides methods for writing to files and
byte arrays.
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| ReflectedUniverse |
Deprecated. |
| Region |
A class for representing a rectangular region.
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| S3Handle |
Provides random access to S3 buckets using the IRandomAccess interface.
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| StatusEvent |
An event indicating a status update.
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| StreamHandle |
Abstract IRandomAccess implementation for reading from InputStreams and
writing to OutputStreams.
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| StreamHandle.Settings |
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| URLHandle |
Provides random access to URLs using the IRandomAccess interface.
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| ZipHandle |
StreamHandle implementation for reading from Zip-compressed files
or byte arrays.
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