DagrDef

BwaAln BwaSampe BwaSamse CallDuplexConsensusReads CallMolecularConsensusReads ClipOverlappingReads ErrorRateByReadPosition ExtractUmisFromBam FilterConsensusReads FilterSomaticVcf GroupReadsByUmi TrimPrimers RealignerTargetCreator SplitNCigarReads FilterBam VerifyBamId CleanSam FilterVcf FixMateInformation GatherBamFiles IntervalListTools MarkDuplicates MergeVcfs RevertSam SetNmAndUqTags SortSam SortVcf UpdateVcfSequenceDictionary FilterFreeBayesCalls Strelka Varscan2Somatic

RemoveSamTags TrimFastq Mutect2

GenotypeConcordance