c

com.fulcrumgenomics.bam

InsertSizeMetric

case class InsertSizeMetric(pair_orientation: PairOrientation, read_pairs: Long = 0, mean: Double = 0, standard_deviation: Double = 0, median: Double = 0, min: Long = 0, max: Long = 0, median_absolute_deviation: Double = 0) extends Metric with Product with Serializable

Linear Supertypes
Serializable, Serializable, Metric, Product, Equals, AnyRef, Any
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Inherited
  1. InsertSizeMetric
  2. Serializable
  3. Serializable
  4. Metric
  5. Product
  6. Equals
  7. AnyRef
  8. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new InsertSizeMetric(pair_orientation: PairOrientation, read_pairs: Long = 0, mean: Double = 0, standard_deviation: Double = 0, median: Double = 0, min: Long = 0, max: Long = 0, median_absolute_deviation: Double = 0)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to any2stringadd[InsertSizeMetric] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (InsertSizeMetric, B)
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to ArrowAssoc[InsertSizeMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  6. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  7. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. def ensuring(cond: (InsertSizeMetric) ⇒ Boolean, msg: ⇒ Any): InsertSizeMetric
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to Ensuring[InsertSizeMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  9. def ensuring(cond: (InsertSizeMetric) ⇒ Boolean): InsertSizeMetric
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to Ensuring[InsertSizeMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  10. def ensuring(cond: Boolean, msg: ⇒ Any): InsertSizeMetric
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to Ensuring[InsertSizeMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  11. def ensuring(cond: Boolean): InsertSizeMetric
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to Ensuring[InsertSizeMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  12. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  14. def formatValues(value: Any): String

    Override this method to customize how values are formatted.

    Override this method to customize how values are formatted.

    Attributes
    protected
    Definition Classes
    Metric
  15. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to StringFormat[InsertSizeMetric] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  16. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  17. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  18. val max: Long
  19. val mean: Double
  20. val median: Double
  21. val median_absolute_deviation: Double
  22. val min: Long
  23. def names: Seq[String]

    Get the names of the arguments in the order they were defined.

    Get the names of the arguments in the order they were defined.

    Definition Classes
    Metric
  24. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  25. final def notify(): Unit
    Definition Classes
    AnyRef
  26. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  27. val pair_orientation: PairOrientation
  28. val read_pairs: Long
  29. val standard_deviation: Double
  30. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  31. def toString(): String
    Definition Classes
    Metric → AnyRef → Any
  32. def values: Seq[String]

    Get the values of the arguments in the order they were defined.

    Get the values of the arguments in the order they were defined.

    Definition Classes
    Metric
  33. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  34. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  35. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  36. def →[B](y: B): (InsertSizeMetric, B)
    Implicit
    This member is added by an implicit conversion from InsertSizeMetric to ArrowAssoc[InsertSizeMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from Serializable

Inherited from Serializable

Inherited from Metric

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from InsertSizeMetric to any2stringadd[InsertSizeMetric]

Inherited by implicit conversion StringFormat from InsertSizeMetric to StringFormat[InsertSizeMetric]

Inherited by implicit conversion Ensuring from InsertSizeMetric to Ensuring[InsertSizeMetric]

Inherited by implicit conversion ArrowAssoc from InsertSizeMetric to ArrowAssoc[InsertSizeMetric]

Ungrouped