Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

   AnyRef → Any

3.  final def ==(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

4.  def applyTo(header: SAMFileHeader): SAMFileHeader

   Sets the appropriate fields in the SAM header for the order.

   Sets the appropriate fields in the SAM header for the order.

   Definition Classes

   SamOrder

5.  final def asInstanceOf[T0]: T0

   Definition Classes

   Any

6.  def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @native() @throws( ... )

7.  final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

8.  def equals(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

9.  def finalize(): Unit

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

10.  final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

    Annotations

    @native()

11.  val groupOrder: GroupOrder

    Returns the group order that should be set in the SAM header.

    Returns the group order that should be set in the SAM header. None will cause GO to be unset.

    Definition Classes

    RandomQuery → SamOrder

12.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

13.  def name: String

    Returns the order's name.

    Returns the order's name.

    Definition Classes

    SamOrder

14.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

15.  final def notify(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

16.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

17.  val sortOrder: SortOrder

    Returns the sort order that should be set in the SAM header.

    Returns the sort order that should be set in the SAM header.

    Definition Classes

    RandomQuery → SamOrder

18.  val sortkey: (SamRecord) ⇒ A

    Function to generate the sort key for sorting records into this ordering.

    Function to generate the sort key for sorting records into this ordering.

    Definition Classes

    RandomQuery → SamOrder

19.  val subSort: Option[String]

    The subsort string to be placed *after* the sort order in the SS tag.

    The subsort string to be placed *after* the sort order in the SS tag.

    Definition Classes

    RandomQuery → SamOrder

20.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

21.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

22.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

23.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @native() @throws( ... )