Packages

object Unknown extends SamOrder with Product with Serializable

Ordering for the official "unknown" ordering.

Linear Supertypes
Serializable, Serializable, SamOrder, Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Unknown
  2. Serializable
  3. Serializable
  4. SamOrder
  5. Product
  6. Equals
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Type Members

  1. type A = Nothing
    Definition Classes
    Unknown → SamOrder

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. def applyTo(header: SAMFileHeader): SAMFileHeader

    Sets the appropriate fields in the SAM header for the order.

    Sets the appropriate fields in the SAM header for the order.

    Definition Classes
    SamOrder
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. val groupOrder: GroupOrder

    Returns the group order that should be set in the SAM header.

    Returns the group order that should be set in the SAM header. None will cause GO to be unset.

    Definition Classes
    Unknown → SamOrder
  12. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  13. def name: String

    Returns the order's name.

    Returns the order's name.

    Definition Classes
    SamOrder
  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  16. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  17. val sortOrder: SortOrder

    Returns the sort order that should be set in the SAM header.

    Returns the sort order that should be set in the SAM header.

    Definition Classes
    Unknown → SamOrder
  18. def sortkey: (SamRecord) ⇒ A

    Function to generate the sort key for sorting records into this ordering.

    Function to generate the sort key for sorting records into this ordering.

    Definition Classes
    Unknown → SamOrder
  19. val subSort: Option[String]

    The subsort string to be placed *after* the sort order in the SS tag.

    The subsort string to be placed *after* the sort order in the SS tag.

    Definition Classes
    Unknown → SamOrder
  20. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  21. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  22. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  23. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from SamOrder

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped