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1.  final def !=(arg0: Any): Boolean

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2.  final def ##(): Int

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3.  final def ==(arg0: Any): Boolean

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4.  final def asInstanceOf[T0]: T0

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5.  def clone(): AnyRef

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6.  final def eq(arg0: AnyRef): Boolean

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7.  def equals(arg0: Any): Boolean

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8.  def finalize(): Unit

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9.  final def getClass(): Class[_]

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10.  def getPerBaseValues(rec: SamRecord): (DuplexConsensusPerBaseValues, DuplexConsensusPerBaseValues)

    Gets the per-base values for the ab and ba strand respectively.

    Gets the per-base values for the ab and ba strand respectively. If the duplex consensus was created from a single strand, the record should have values for only the ab-strand. In this case, the values for the ba strand are set as follows: the bases are set to "N", the depths and errors are set to 0.

11.  def hashCode(): Int

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12.  final def isInstanceOf[T0]: Boolean

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13.  def maskBaseAt(abValues: DuplexConsensusPerBaseValues, baValues: DuplexConsensusPerBaseValues, idx: Int, ccFilters: ConsensusReadFilter, abFilters: ConsensusReadFilter, baFilters: ConsensusReadFilter): Boolean

    Returns true if the base at the given index should be masked.

14.  final def ne(arg0: AnyRef): Boolean

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15.  final def notify(): Unit

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16.  final def notifyAll(): Unit

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17.  def ssAgrees(idx: Int, abValues: DuplexConsensusPerBaseValues, baValues: DuplexConsensusPerBaseValues): Boolean

    Returns false if both the ab and ba strand had depth > 0 at the given position and their base call disagreed, otherwise true

18.  final def synchronized[T0](arg0: ⇒ T0): T0

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19.  def toString(): String

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20.  final def wait(): Unit

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21.  final def wait(arg0: Long, arg1: Int): Unit

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22.  final def wait(arg0: Long): Unit

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