object Strategy extends FgBioEnum[Strategy]

Linear Supertypes
FgBioEnum[Strategy], Enum[Strategy], AnyRef, Any
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Inherited
  1. Strategy
  2. FgBioEnum
  3. Enum
  4. AnyRef
  5. Any
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Visibility
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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. def apply(name: String): Strategy

    The string constructor method that enables us to create the case object instance by name.

    The string constructor method that enables us to create the case object instance by name.

    Definition Classes
    FgBioEnum
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. macro def findValues: IndexedSeq[Strategy]
    Attributes
    protected
    Definition Classes
    Enum
  11. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  12. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. def indexOf(member: Strategy): Int
    Definition Classes
    Enum
  14. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  15. final lazy val lowerCaseNamesToValuesMap: Map[String, Strategy]
    Definition Classes
    Enum
  16. lazy val namesToValuesMap: Map[String, Strategy]
    Definition Classes
    Enum
  17. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  18. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  19. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  20. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  21. def toString(): String
    Definition Classes
    AnyRef → Any
  22. final lazy val upperCaseNameValuesToMap: Map[String, Strategy]
    Definition Classes
    Enum
  23. def values: IndexedSeq[Strategy]
    Definition Classes
    Strategy → Enum
  24. final lazy val valuesToIndex: Map[Strategy, Int]
    Definition Classes
    Enum
  25. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  28. def withName(name: String): Strategy
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  29. def withNameEither(name: String): Either[NoSuchMember[Strategy], Strategy]
    Definition Classes
    Enum
  30. def withNameInsensitive(name: String): Strategy
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  31. def withNameInsensitiveEither(name: String): Either[NoSuchMember[Strategy], Strategy]
    Definition Classes
    Enum
  32. def withNameInsensitiveOption(name: String): Option[Strategy]
    Definition Classes
    Enum
  33. def withNameLowercaseOnly(name: String): Strategy
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  34. def withNameLowercaseOnlyEither(name: String): Either[NoSuchMember[Strategy], Strategy]
    Definition Classes
    Enum
  35. def withNameLowercaseOnlyOption(name: String): Option[Strategy]
    Definition Classes
    Enum
  36. def withNameOption(name: String): Option[Strategy]
    Definition Classes
    Enum
  37. def withNameUppercaseOnly(name: String): Strategy
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  38. def withNameUppercaseOnlyEither(name: String): Either[NoSuchMember[Strategy], Strategy]
    Definition Classes
    Enum
  39. def withNameUppercaseOnlyOption(name: String): Option[Strategy]
    Definition Classes
    Enum
  40. object Adjacency extends Strategy with Product with Serializable

    Strategy based on the directed adjacency method described in [umi_tools](http://dx.doi.org/10.1101/051755) that allows for errors between UMIs but only when there is a count gradient.

  41. object Edit extends Strategy with Product with Serializable

    Strategy to cluster reads into groups based on mismatches between reads in clusters.

  42. object Identity extends Strategy with Product with Serializable

    Strategy to only reads with identical UMI sequences are grouped together.

  43. object Paired extends Strategy with Product with Serializable

    Strategy similar to the Adjacency strategy similar to adjacency but for methods that produce template with a pair of UMIs such that a read with A-B is related to but not identical to a read with B-A.

Inherited from FgBioEnum[Strategy]

Inherited from Enum[Strategy]

Inherited from AnyRef

Inherited from Any

Ungrouped