htsjdk.samtools

Class CRAMIterator.CramFileIterable

java.lang.Object

htsjdk.samtools.CRAMIterator.CramFileIterable

All Implemented Interfaces:

java.lang.Iterable<SAMRecord>

Enclosing class:

CRAMIterator

public static class CRAMIterator.CramFileIterable
extends java.lang.Object
implements java.lang.Iterable<SAMRecord>

Constructor Summary

Constructors

Constructor and Description
CRAMIterator.CramFileIterable(java.io.File cramFile, ReferenceSource referenceSource)
CRAMIterator.CramFileIterable(java.io.File cramFile, ReferenceSource referenceSource, ValidationStringency validationStringency)

Method Summary

Methods

Modifier and Type	Method and Description
java.util.Iterator<SAMRecord>	iterator()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CRAMIterator.CramFileIterable

public CRAMIterator.CramFileIterable(java.io.File cramFile,
                             ReferenceSource referenceSource,
                             ValidationStringency validationStringency)

CRAMIterator.CramFileIterable

public CRAMIterator.CramFileIterable(java.io.File cramFile,
                             ReferenceSource referenceSource)

Method Detail

iterator

public java.util.Iterator<SAMRecord> iterator()

Specified by:

iterator in interface java.lang.Iterable<SAMRecord>