NAME_SIZE_SIZE
TwoBitFile
NarrowPeakParser
features
NonoverlappingRegions
models
NormalizationUtils
util
NucleotideContigFragmentField
projections
NucleotideContigFragmentRDDFunctions
contig
NumericByteSequence
TagType
NumericFloatSequence
TagType
NumericIntSequence
TagType
NumericShortSequence
TagType
NumericUnsignedByteSequence
TagType
NumericUnsignedIntSequence
TagType
NumericUnsignedShortSequence
TagType
name
ProgramRecord
SequenceRecord
names
Gene
Transcript
GenomicPositionPartitioner
nextKeyValue
BAMFilteredRecordReader
numAlignmentBlocks
RichCigar
numBins
GenomeBins
numElements
RichCigar
numPartitions
GenomicPositionPartitioner
GenomicRegionPartitioner
ReferencePartitioner
numParts
GenomicPositionPartitioner
numSeq
TwoBitFile
numUnmappedReads
MDTagging
numberOfFragmentsInContig
NucleotideContigFragmentField
numberOfPositionsToShiftIndel
NormalizationUtils