ADAMContext

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1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. implicit def alignmentRecordsToContigsConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

   

5. implicit def alignmentRecordsToContigsDatasetConversionFn(gRdd: AlignmentRecordRDD, ds: Dataset[NucleotideContigFragment]): NucleotideContigFragmentRDD

   

6. implicit def alignmentRecordsToCoverageConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[Coverage]): CoverageRDD

   

7. implicit def alignmentRecordsToCoverageDatasetConversionFn(gRdd: AlignmentRecordRDD, ds: Dataset[Coverage]): CoverageRDD

   

8. implicit def alignmentRecordsToFeaturesConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[Feature]): FeatureRDD

   

9. implicit def alignmentRecordsToFeaturesDatasetConversionFn(gRdd: AlignmentRecordRDD, ds: Dataset[Feature]): FeatureRDD

   

10. implicit def alignmentRecordsToFragmentsConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[Fragment]): FragmentRDD

    

11. implicit def alignmentRecordsToFragmentsDatasetConversionFn(gRdd: AlignmentRecordRDD, ds: Dataset[Fragment]): FragmentRDD

    

12. implicit def alignmentRecordsToGenotypesConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[Genotype]): GenotypeRDD

    

13. implicit def alignmentRecordsToGenotypesDatasetConversionFn(gRdd: AlignmentRecordRDD, ds: Dataset[Genotype]): GenotypeRDD

    

14. implicit def alignmentRecordsToVariantContextConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[VariantContext]): VariantContextRDD

    

15. implicit def alignmentRecordsToVariantsConversionFn(gRdd: AlignmentRecordRDD, rdd: RDD[Variant]): VariantRDD

    

16. implicit def alignmentRecordsToVariantsDatasetConversionFn(gRdd: AlignmentRecordRDD, ds: Dataset[Variant]): VariantRDD

    

17. final def asInstanceOf[T0]: T0

    

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18. def clone(): AnyRef

    

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19. implicit def contigsToAlignmentRecordsConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

    

20. implicit def contigsToAlignmentRecordsDatasetConversionFn(gRdd: NucleotideContigFragmentRDD, ds: Dataset[AlignmentRecord]): AlignmentRecordRDD

    

21. implicit def contigsToCoverageConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[Coverage]): CoverageRDD

    

22. implicit def contigsToCoverageDatasetConversionFn(gRdd: NucleotideContigFragmentRDD, ds: Dataset[Coverage]): CoverageRDD

    

23. implicit def contigsToFeaturesConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[Feature]): FeatureRDD

    

24. implicit def contigsToFeaturesDatasetConversionFn(gRdd: NucleotideContigFragmentRDD, ds: Dataset[Feature]): FeatureRDD

    

25. implicit def contigsToFragmentsConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[Fragment]): FragmentRDD

    

26. implicit def contigsToFragmentsDatasetConversionFn(gRdd: NucleotideContigFragmentRDD, ds: Dataset[Fragment]): FragmentRDD

    

27. implicit def contigsToGenotypesConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[Genotype]): GenotypeRDD

    

28. implicit def contigsToGenotypesDatasetConversionFn(gRdd: NucleotideContigFragmentRDD, ds: Dataset[Genotype]): GenotypeRDD

    

29. implicit def contigsToVariantContextConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[VariantContext]): VariantContextRDD

    

30. implicit def contigsToVariantsConversionFn(gRdd: NucleotideContigFragmentRDD, rdd: RDD[Variant]): VariantRDD

    

31. implicit def contigsToVariantsDatasetConversionFn(gRdd: NucleotideContigFragmentRDD, ds: Dataset[Variant]): VariantRDD

    

32. implicit def coverageToAlignmentRecordsConversionFn(gRdd: CoverageRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

    

33. implicit def coverageToAlignmentRecordsDatasetConversionFn(gRdd: CoverageRDD, ds: Dataset[AlignmentRecord]): AlignmentRecordRDD

    

34. implicit def coverageToContigsConversionFn(gRdd: CoverageRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

35. implicit def coverageToContigsDatasetConversionFn(gRdd: CoverageRDD, ds: Dataset[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

36. implicit def coverageToFeaturesConversionFn(gRdd: CoverageRDD, rdd: RDD[Feature]): FeatureRDD

    

37. implicit def coverageToFeaturesDatasetConversionFn(gRdd: CoverageRDD, ds: Dataset[Feature]): FeatureRDD

    

38. implicit def coverageToFragmentsConversionFn(gRdd: CoverageRDD, rdd: RDD[Fragment]): FragmentRDD

    

39. implicit def coverageToFragmentsDatasetConversionFn(gRdd: CoverageRDD, ds: Dataset[Fragment]): FragmentRDD

    

40. implicit def coverageToGenotypesConversionFn(gRdd: CoverageRDD, rdd: RDD[Genotype]): GenotypeRDD

    

41. implicit def coverageToGenotypesDatasetConversionFn(gRdd: CoverageRDD, ds: Dataset[Genotype]): GenotypeRDD

    

42. implicit def coverageToVariantContextConversionFn(gRdd: CoverageRDD, rdd: RDD[VariantContext]): VariantContextRDD

    

43. implicit def coverageToVariantsConversionFn(gRdd: CoverageRDD, rdd: RDD[Variant]): VariantRDD

    

44. implicit def coverageToVariantsDatasetConversionFn(gRdd: CoverageRDD, ds: Dataset[Variant]): VariantRDD

    

45. final def eq(arg0: AnyRef): Boolean

    

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46. def equals(arg0: Any): Boolean

    

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47. implicit def featuresToAlignmentRecordsConversionFn(gRdd: FeatureRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

    

48. implicit def featuresToAlignmentRecordsDatasetConversionFn(gRdd: FeatureRDD, ds: Dataset[AlignmentRecord]): AlignmentRecordRDD

    

49. implicit def featuresToContigsConversionFn(gRdd: FeatureRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

50. implicit def featuresToContigsDatasetConversionFn(gRdd: FeatureRDD, ds: Dataset[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

51. implicit def featuresToCoverageConversionFn(gRdd: FeatureRDD, rdd: RDD[Coverage]): CoverageRDD

    

52. implicit def featuresToCoverageDatasetConversionFn(gRdd: FeatureRDD, ds: Dataset[Coverage]): CoverageRDD

    

53. implicit def featuresToFragmentsConversionFn(gRdd: FeatureRDD, rdd: RDD[Fragment]): FragmentRDD

    

54. implicit def featuresToFragmentsDatasetConversionFn(gRdd: FeatureRDD, ds: Dataset[Fragment]): FragmentRDD

    

55. implicit def featuresToGenotypesConversionFn(gRdd: FeatureRDD, rdd: RDD[Genotype]): GenotypeRDD

    

56. implicit def featuresToGenotypesDatasetConversionFn(gRdd: FeatureRDD, ds: Dataset[Genotype]): GenotypeRDD

    

57. implicit def featuresToVariantContextConversionFn(gRdd: FeatureRDD, rdd: RDD[VariantContext]): VariantContextRDD

    

58. implicit def featuresToVariantsConversionFn(gRdd: FeatureRDD, rdd: RDD[Variant]): VariantRDD

    

59. implicit def featuresToVariantsDatasetConversionFn(gRdd: FeatureRDD, ds: Dataset[Variant]): VariantRDD

    

60. def finalize(): Unit

    

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61. implicit def fragmentsToAlignmentRecordsConversionFn(gRdd: FragmentRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

    

62. implicit def fragmentsToAlignmentRecordsDatasetConversionFn(gRdd: FragmentRDD, ds: Dataset[AlignmentRecord]): AlignmentRecordRDD

    

63. implicit def fragmentsToContigsConversionFn(gRdd: FragmentRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

64. implicit def fragmentsToContigsDatasetConversionFn(gRdd: FragmentRDD, ds: Dataset[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

65. implicit def fragmentsToCoverageConversionFn(gRdd: FragmentRDD, rdd: RDD[Coverage]): CoverageRDD

    

66. implicit def fragmentsToCoverageDatasetConversionFn(gRdd: FragmentRDD, ds: Dataset[Coverage]): CoverageRDD

    

67. implicit def fragmentsToFeaturesConversionFn(gRdd: FragmentRDD, rdd: RDD[Feature]): FeatureRDD

    

68. implicit def fragmentsToFeaturesDatasetConversionFn(gRdd: FragmentRDD, ds: Dataset[Feature]): FeatureRDD

    

69. implicit def fragmentsToGenotypesConversionFn(gRdd: FragmentRDD, rdd: RDD[Genotype]): GenotypeRDD

    

70. implicit def fragmentsToGenotypesDatasetConversionFn(gRdd: FragmentRDD, ds: Dataset[Genotype]): GenotypeRDD

    

71. implicit def fragmentsToVariantContextConversionFn(gRdd: FragmentRDD, rdd: RDD[VariantContext]): VariantContextRDD

    

72. implicit def fragmentsToVariantsConversionFn(gRdd: FragmentRDD, rdd: RDD[Variant]): VariantRDD

    

73. implicit def fragmentsToVariantsDatasetConversionFn(gRdd: FragmentRDD, ds: Dataset[Variant]): VariantRDD

    

74. implicit def genericToAlignmentRecordsConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

    

75. implicit def genericToContigsConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

76. implicit def genericToCoverageConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[Coverage]): CoverageRDD

    

77. implicit def genericToFeatureConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[Feature]): FeatureRDD

    

78. implicit def genericToFragmentsConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[Fragment]): FragmentRDD

    

79. implicit def genericToGenotypesConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[Genotype]): GenotypeRDD

    

80. implicit def genericToVariantContextsConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[VariantContext]): VariantContextRDD

    

81. implicit def genericToVariantsConversionFn[Y <: GenericGenomicRDD[_]](gRdd: Y, rdd: RDD[Variant]): VariantRDD

    

82. implicit def genotypesToAlignmentRecordsConversionFn(gRdd: GenotypeRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

    

83. implicit def genotypesToAlignmentRecordsDatasetConversionFn(gRdd: GenotypeRDD, ds: Dataset[AlignmentRecord]): AlignmentRecordRDD

    

84. implicit def genotypesToContigsConversionFn(gRdd: GenotypeRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

85. implicit def genotypesToContigsDatasetConversionFn(gRdd: GenotypeRDD, ds: Dataset[NucleotideContigFragment]): NucleotideContigFragmentRDD

    

86. implicit def genotypesToCoverageConversionFn(gRdd: GenotypeRDD, rdd: RDD[Coverage]): CoverageRDD

    

87. implicit def genotypesToCoverageDatasetConversionFn(gRdd: GenotypeRDD, ds: Dataset[Coverage]): CoverageRDD

    

88. implicit def genotypesToFeaturesConversionFn(gRdd: GenotypeRDD, rdd: RDD[Feature]): FeatureRDD

    

89. implicit def genotypesToFeaturesDatasetConversionFn(gRdd: GenotypeRDD, ds: Dataset[Feature]): FeatureRDD

    

90. implicit def genotypesToFragmentsConversionFn(gRdd: GenotypeRDD, rdd: RDD[Fragment]): FragmentRDD

    

91. implicit def genotypesToFragmentsDatasetConversionFn(gRdd: GenotypeRDD, ds: Dataset[Fragment]): FragmentRDD

    

92. implicit def genotypesToVariantContextConversionFn(gRdd: GenotypeRDD, rdd: RDD[VariantContext]): VariantContextRDD

    

93. implicit def genotypesToVariantsConversionFn(gRdd: GenotypeRDD, rdd: RDD[Variant]): VariantRDD

    

94. implicit def genotypesToVariantsDatasetConversionFn(gRdd: GenotypeRDD, ds: Dataset[Variant]): VariantRDD

    

95. final def getClass(): Class[_]

    

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96. def hashCode(): Int

    

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97. final def isInstanceOf[T0]: Boolean

    

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98. final def ne(arg0: AnyRef): Boolean

    

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99. final def notify(): Unit

    

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100. final def notifyAll(): Unit

     

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101. implicit def rddToADAMRDD[T](rdd: RDD[T])(implicit ev1: (T) ⇒ IndexedRecord, ev2: Manifest[T]): ConcreteADAMRDDFunctions[T]

     

102. implicit def recordToRichRecord(record: AlignmentRecord): RichAlignmentRecord

     

103. implicit def sameTypeConversionFn[T, U <: GenomicRDD[T, U]](gRdd: U, rdd: RDD[T]): U

     

104. implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext

     

105. final def synchronized[T0](arg0: ⇒ T0): T0

     

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106. def toString(): String

     

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107. implicit def variantContextsToAlignmentRecordsConversionFn(gRdd: VariantContextRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

     

108. implicit def variantContextsToContigsConversionFn(gRdd: VariantContextRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

     

109. implicit def variantContextsToCoverageConversionFn(gRdd: VariantContextRDD, rdd: RDD[Coverage]): CoverageRDD

     

110. implicit def variantContextsToFeaturesConversionFn(gRdd: VariantContextRDD, rdd: RDD[Feature]): FeatureRDD

     

111. implicit def variantContextsToFragmentsConversionFn(gRdd: VariantContextRDD, rdd: RDD[Fragment]): FragmentRDD

     

112. implicit def variantContextsToGenotypesConversionFn(gRdd: VariantContextRDD, rdd: RDD[Genotype]): GenotypeRDD

     

113. implicit def variantContextsToVariantsConversionFn(gRdd: VariantContextRDD, rdd: RDD[Variant]): VariantRDD

     

114. implicit def variantsToAlignmentRecordsConversionFn(gRdd: VariantRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

     

115. implicit def variantsToAlignmentRecordsDatasetConversionFn(gRdd: VariantRDD, ds: Dataset[AlignmentRecord]): AlignmentRecordRDD

     

116. implicit def variantsToContigsConversionFn(gRdd: VariantRDD, rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDD

     

117. implicit def variantsToContigsDatasetConversionFn(gRdd: VariantRDD, ds: Dataset[NucleotideContigFragment]): NucleotideContigFragmentRDD

     

118. implicit def variantsToCoverageConversionFn(gRdd: VariantRDD, rdd: RDD[Coverage]): CoverageRDD

     

119. implicit def variantsToCoverageDatasetConversionFn(gRdd: VariantRDD, ds: Dataset[Coverage]): CoverageRDD

     

120. implicit def variantsToFeaturesConversionFn(gRdd: VariantRDD, rdd: RDD[Feature]): FeatureRDD

     

121. implicit def variantsToFeaturesDatasetConversionFn(gRdd: VariantRDD, ds: Dataset[Feature]): FeatureRDD

     

122. implicit def variantsToFragmentsConversionFn(gRdd: VariantRDD, rdd: RDD[Fragment]): FragmentRDD

     

123. implicit def variantsToFragmentsDatasetConversionFn(gRdd: VariantRDD, ds: Dataset[Fragment]): FragmentRDD

     

124. implicit def variantsToGenotypesConversionFn(gRdd: VariantRDD, rdd: RDD[Genotype]): GenotypeRDD

     

125. implicit def variantsToGenotypesDatasetConversionFn(gRdd: VariantRDD, ds: Dataset[Genotype]): GenotypeRDD

     

126. implicit def variantsToVariantContextConversionFn(gRdd: VariantRDD, rdd: RDD[VariantContext]): VariantContextRDD

     

127. final def wait(): Unit

     

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128. final def wait(arg0: Long, arg1: Int): Unit

     

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129. final def wait(arg0: Long): Unit

     

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