InterleavedFASTQInFormatter

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1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val WRITE_ORIGINAL_QUAL: String

   

   Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written.

   Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written. True indicates to write the original qualities. The default is false.

5. val WRITE_SUFFIXES: String

   

   Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair.

   Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair. Default is false (no suffixes).

6. def apply(gRdd: FragmentRDD): InterleavedFASTQInFormatter

   

   Builds an InterleavedFASTQInFormatter to write Interleaved FASTQ.

   Builds an InterleavedFASTQInFormatter to write Interleaved FASTQ.

   gRdd

   GenomicRDD of Fragments. Used to get HadoopConfiguration.

   returns

   Returns a new Interleaved FASTQ InFormatter.

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   InterleavedFASTQInFormatter → InFormatterCompanion

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9. final def eq(arg0: AnyRef): Boolean

   

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10. def equals(arg0: Any): Boolean

    

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11. def finalize(): Unit

    

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15. final def ne(arg0: AnyRef): Boolean

    

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16. final def notify(): Unit

    

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20. final def wait(): Unit

    

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