Package

org.bdgenomics.adam.rdd

fragment

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package fragment

Visibility
  1. Public
  2. All

Type Members

  1. case class FragmentRDD(rdd: RDD[Fragment], sequences: SequenceDictionary, recordGroups: RecordGroupDictionary) extends AvroReadGroupGenomicRDD[Fragment, FragmentRDD] with Product with Serializable

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    A genomic RDD that supports RDDs of Fragments.

    A genomic RDD that supports RDDs of Fragments.

    rdd

    The underlying RDD of Fragment data.

    sequences

    The genomic sequences this data was aligned to, if any.

    recordGroups

    The record groups these Fragments came from.

Value Members

  1. object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Serializable

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    InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

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