Package loci.common

Interface Summary

Interface	Description
IRandomAccess	Interface for random access into structures (e.g., files or arrays).
StatusListener	A listener for status updates.
StatusReporter	A simple interface for objects wishing to report their status to listeners.

Class Summary

Class	Description
AbstractNIOHandle	A wrapper for buffered NIO logic that implements the IRandomAccess interface.
ByteArrayHandle	A wrapper for a byte array that implements the IRandomAccess interface.
BZip2Handle	StreamHandle implementation for reading from BZip2-compressed files or byte arrays.
CaseInsensitiveLocation	Deprecated. use Location instead
CBZip2InputStream	An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
Constants	Constants that are used within many classes in loci.common.
CRC	A simple class to hold and calculate the CRC for sanity checking the data.
DataTools	A utility class with convenience methods for reading, writing and decoding words.
DateTools	A utility class with convenience methods for working with dates.
DebugTools	A utility class with convenience methods for debugging.
FileHandle	A wrapper for RandomAccessFile that implements the IRandomAccess interface.
GZipHandle	StreamHandle implementation for reading from gzip-compressed files or byte arrays.
IniList	A data structure containing a parsed list of INI key/value tables.
IniParser	A simple parser for INI configuration files.
IniTable	A data structure containing a parsed list of INI key/value tables.
IniWriter	A simple writer for INI configuration files.
Location	Pseudo-extension of File that supports reading over HTTP (among other things).
Log4jTools	A utility class with convenience methods for log4j.
LogbackTools	A utility class with convenience methods for logback.
NIOByteBufferProvider	Provides a facade to byte buffer allocation that enables FileChannel.map() usage on platforms where it's unlikely to give us problems and heap allocation where it is.
NIOFileHandle	A wrapper for buffered NIO logic that implements the IRandomAccess interface.
NIOInputStream	NIOInputStream provides methods for "intelligent" reading of files and byte arrays.
RandomAccessInputStream	Top-level class for reading from various data sources.
RandomAccessOutputStream	RandomAccessOutputStream provides methods for writing to files and byte arrays.
ReflectedUniverse	Deprecated.
Region	A class for representing a rectangular region.
S3Handle	Provides random access to S3 buckets using the IRandomAccess interface.
StatusEvent	An event indicating a status update.
StreamHandle	Abstract IRandomAccess implementation for reading from InputStreams and writing to OutputStreams.
StreamHandle.Settings
URLHandle	Provides random access to URLs using the IRandomAccess interface.
ZipHandle	StreamHandle implementation for reading from Zip-compressed files or byte arrays.

Enum Summary

Enum	Description
Location.UrlType

Exception Summary

Exception	Description
HandleException	HandleException is the exception thrown when something goes wrong in one of the custom I/O classes.
ReflectException	ReflectException is the exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse.