Packages

class CountAlignments extends BDGSparkCommand[CountAlignmentsArgs] with Logging

Count alignments ADAM command.

Linear Supertypes
BDGSparkCommand[CountAlignmentsArgs], Logging, BDGCommand, Runnable, AnyRef, Any
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Inherited
  1. CountAlignments
  2. BDGSparkCommand
  3. Logging
  4. BDGCommand
  5. Runnable
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new CountAlignments(args: CountAlignmentsArgs)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val args: CountAlignmentsArgs
    Attributes
    protected
    Definition Classes
    CountAlignments → BDGSparkCommand
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  7. val companion: CountAlignments.type
    Definition Classes
    CountAlignments → BDGCommand
  8. def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  9. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  10. def debug(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  11. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  12. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  13. def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  14. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  15. def error(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  16. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  17. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  18. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  19. def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  20. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  21. def info(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  22. def isDebugEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  23. def isErrorEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  24. def isInfoEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  25. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  26. def isTraceEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  27. def isWarnEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  28. def logger: Logger
    Attributes
    protected
    Definition Classes
    Logging
  29. def loggerName: String
    Attributes
    protected
    Definition Classes
    Logging
  30. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  31. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  32. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  33. def run(sc: SparkContext): Unit
    Definition Classes
    CountAlignments → BDGSparkCommand
  34. def run(): Unit
    Definition Classes
    BDGSparkCommand → Runnable
  35. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  36. def toString(): String
    Definition Classes
    AnyRef → Any
  37. def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  38. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  39. def trace(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  40. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  42. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  43. def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  44. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  45. def warn(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging

Inherited from BDGSparkCommand[CountAlignmentsArgs]

Inherited from Logging

Inherited from BDGCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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