Packages

class CountAlignmentsPerRead extends BDGSparkCommand[CountAlignmentsPerReadArgs] with Logging

Count alignments per read ADAM command.

Linear Supertypes
BDGSparkCommand[CountAlignmentsPerReadArgs], Logging, BDGCommand, Runnable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. CountAlignmentsPerRead
  2. BDGSparkCommand
  3. Logging
  4. BDGCommand
  5. Runnable
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new CountAlignmentsPerRead(args: CountAlignmentsPerReadArgs)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val args: CountAlignmentsPerReadArgs
    Attributes
    protected
    Definition Classes
    CountAlignmentsPerRead → BDGSparkCommand
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  7. val companion: CountAlignmentsPerRead.type
    Definition Classes
    CountAlignmentsPerRead → BDGCommand
  8. def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  9. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  10. def debug(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  11. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  12. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  13. def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  14. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  15. def error(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  16. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  17. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  18. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  19. def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  20. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  21. def info(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  22. def isDebugEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  23. def isErrorEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  24. def isInfoEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  25. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  26. def isTraceEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  27. def isWarnEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  28. def logger: Logger
    Attributes
    protected
    Definition Classes
    Logging
  29. def loggerName: String
    Attributes
    protected
    Definition Classes
    Logging
  30. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  31. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  32. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  33. def run(sc: SparkContext): Unit
    Definition Classes
    CountAlignmentsPerRead → BDGSparkCommand
  34. def run(): Unit
    Definition Classes
    BDGSparkCommand → Runnable
  35. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  36. def toString(): String
    Definition Classes
    AnyRef → Any
  37. def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  38. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  39. def trace(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  40. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  42. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  43. def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  44. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  45. def warn(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging

Inherited from BDGSparkCommand[CountAlignmentsPerReadArgs]

Inherited from Logging

Inherited from BDGCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

Ungrouped