Packages

package commands

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Type Members

  1. class CountAlignments extends BDGSparkCommand[CountAlignmentsArgs] with Logging

    Count alignments ADAM command.

  2. class CountAlignmentsArgs extends Args4jBase
  3. class CountAlignmentsPerRead extends BDGSparkCommand[CountAlignmentsPerReadArgs] with Logging

    Count alignments per read ADAM command.

  4. class CountAlignmentsPerReadArgs extends Args4jBase
  5. final class JavaADAMCommands extends AnyRef

    External commands for ADAM: Genomic Data System.

  6. final class JavaCountAlignments extends Runnable with Serializable

    Count alignments Java ADAM command.

  7. final class JavaCountAlignmentsPerRead extends Runnable with Serializable

    Count alignments per read Java ADAM command.

Value Members

  1. object ADAMCommandsGuiceMain

    Add external commands to ADAM command line interface via Guice injection.

  2. object ADAMCommandsMain

    Add external commands to ADAM command line interface.

  3. object CountAlignments extends BDGCommandCompanion
  4. object CountAlignmentsPerRead extends BDGCommandCompanion

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