Packages

package gfa1

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Visibility
  1. Public
  2. All

Type Members

  1. case class Gfa1Record(recordType: String, id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], tags: Map[String, Tag]) extends Product with Serializable

    GFA 1.0 record case class for use in data frames.

  2. case class Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag]) extends Product with Serializable

    GFA 1.0 link case class for use in data frames.

  3. case class Path(pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], tags: Map[String, Tag]) extends Product with Serializable

    GFA 1.0 path case class for use in data frames.

  4. case class Segment(id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, tags: Map[String, Tag]) extends Product with Serializable

    GFA 1.0 segment case class for use in data frames.

  5. case class Traversal(pathName: String, ordinal: Option[Int], source: Reference, target: Reference, overlap: String, tags: Map[String, Tag]) extends Product with Serializable

    GFA 1.0 traversal case class for use in data frames.

Value Members

  1. object Gfa1Record extends Serializable
  2. object Link extends Serializable
  3. object Path extends Serializable
  4. object Segment extends Serializable
  5. object Traversal extends Serializable

Ungrouped