package gfa1
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Type Members
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case class
Gfa1Record(recordType: String, id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 record case class for use in data frames.
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case class
Link(id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 link case class for use in data frames.
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case class
Path(pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 path case class for use in data frames.
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case class
Segment(id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 segment case class for use in data frames.
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case class
Traversal(pathName: String, ordinal: Option[Int], source: Reference, target: Reference, overlap: String, tags: Map[String, Tag]) extends Product with Serializable
GFA 1.0 traversal case class for use in data frames.