Packages

case class Containment(id: String, container: Reference, contained: Reference, position: Option[Int], overlap: String, mismatchCount: Option[Int], readCount: Option[Int], annotations: Map[String, Annotation]) extends Product with Serializable

GFA 1.0 containment case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
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  2. By Inheritance
Inherited
  1. Containment
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Containment(id: String, container: Reference, contained: Reference, position: Option[Int], overlap: String, mismatchCount: Option[Int], readCount: Option[Int], annotations: Map[String, Annotation])

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val annotations: Map[String, Annotation]
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def asJava(): org.dishevelled.bio.assembly.gfa1.Containment
  7. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  8. val contained: Reference
  9. val container: Reference
  10. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  11. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. val id: String
  14. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  15. val mismatchCount: Option[Int]
  16. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  17. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  18. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  19. val overlap: String
  20. val position: Option[Int]
  21. val readCount: Option[Int]
  22. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  23. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  24. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  25. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped