Packages

case class Gfa1Record(recordType: String, name: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], container: Reference, contained: Reference, position: Option[Int], annotations: Map[String, Annotation]) extends Product with Serializable

GFA 1.0 record case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Gfa1Record
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Gfa1Record(recordType: String, name: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], container: Reference, contained: Reference, position: Option[Int], annotations: Map[String, Annotation])

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val annotations: Map[String, Annotation]
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  7. val contained: Reference
  8. val container: Reference
  9. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  10. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. val fragmentCount: Option[Int]
  12. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. val id: String
  14. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  15. val kmerCount: Option[Int]
  16. val length: Option[Int]
  17. val mappingQuality: Option[Int]
  18. val mismatchCount: Option[Int]
  19. val name: String
  20. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  21. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  22. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  23. val ordinal: Option[Int]
  24. val overlap: String
  25. val overlaps: Option[Seq[String]]
  26. val pathName: String
  27. val position: Option[Int]
  28. val readCount: Option[Int]
  29. val recordType: String
  30. val segments: Seq[Reference]
  31. val sequence: String
  32. val sequenceChecksum: String
  33. val sequenceUri: String
  34. val source: Reference
  35. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  36. val target: Reference
  37. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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