case class Gfa1Record(recordType: String, name: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], container: Reference, contained: Reference, position: Option[Int], annotations: Map[String, Annotation]) extends Product with Serializable
GFA 1.0 record case class for use in data frames.
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Instance Constructors
- new Gfa1Record(recordType: String, name: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, id: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], container: Reference, contained: Reference, position: Option[Int], annotations: Map[String, Annotation])
Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
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def
clone(): AnyRef
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- val contained: Reference
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def
eq(arg0: AnyRef): Boolean
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def
finalize(): Unit
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- val fragmentCount: Option[Int]
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final
def
getClass(): Class[_]
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- val id: String
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final
def
isInstanceOf[T0]: Boolean
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- val kmerCount: Option[Int]
- val length: Option[Int]
- val mappingQuality: Option[Int]
- val mismatchCount: Option[Int]
- val name: String
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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- val ordinal: Option[Int]
- val overlap: String
- val overlaps: Option[Seq[String]]
- val pathName: String
- val position: Option[Int]
- val readCount: Option[Int]
- val recordType: String
- val segments: Seq[Reference]
- val sequence: String
- val sequenceChecksum: String
- val sequenceUri: String
- val source: Reference
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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- val target: Reference
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final
def
wait(): Unit
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def
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final
def
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