Packages

case class Segment(name: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, annotations: Map[String, Annotation]) extends Product with Serializable

GFA 1.0 segment case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Segment
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new Segment(name: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, annotations: Map[String, Annotation])

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val annotations: Map[String, Annotation]
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def asJava(): org.dishevelled.bio.assembly.gfa1.Segment
  7. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  8. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  9. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. val fragmentCount: Option[Int]
  11. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  12. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  13. val kmerCount: Option[Int]
  14. val length: Option[Int]
  15. val name: String
  16. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  17. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  18. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  19. val readCount: Option[Int]
  20. val sequence: String
  21. val sequenceChecksum: String
  22. val sequenceUri: String
  23. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  24. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  25. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped