FittingPairwiseAlignment
object FittingPairwiseAlignment
class Object
trait Matchable
class Any
Value members
Concrete methods
def fittingAffineAlignment(ref: String, query: String, scores: Map[(Char, Char), Int], indelpenalty: Int, gapextension: Int): (Int, String, String)
def fittingAlignment(ref: String, query: String, scores: Map[(Char, Char), Int], indelpenalty: Int): (Int, String, String)
def fittingAlignment(v: String, w: String, scores: Map[(Char, Char), Int], indelpenalty: Int, gapextension: Int): (Int, String, String)