WFA
object WFA
class Object
trait Matchable
class Any
Value members
Concrete methods
def globalAffineAlignment(qString: String, tString: String, x: Int, o: Int, e: Int): (Int, List[Op], String, String)
Global affine pairwise alignment with the Wavefront Alignment algorithm https://doi.org/10.1093/bioinformatics/btaa777
Global affine pairwise alignment with the Wavefront Alignment algorithm https://doi.org/10.1093/bioinformatics/btaa777
- Value Params
- e
gap extension penalty, positive integer
- o
gap open penalty, positive integer
- qString
input string, ascii
- tString
input string, ascii
- x
mismatch penalty, positive integer
- Returns
(score, cigar, aligned Q, aligned T)