ADAM_2.11: Core 0.23.0 API

effects

TranscriptEffectField TranscriptEffect

empty

RecordGroupDictionary SequenceDictionary

emptyFn

FullOuterShuffleRegionJoin InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin LeftOuterShuffleRegionJoinAndGroupByLeft RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin

encoder

end

Coverage MdTag ReferenceRegion AlignmentRecordField FeatureField GenotypeField NucleotideContigFragmentField SliceField VariantField AlignmentRecord Feature Genotype NucleotideContigFragment Variant

equals

MdTag RecordGroup SequenceDictionary SequenceRecord RichVariant

errorProbabilityToPhred

exonId

FeatureField Feature

expectedAlleleDosage

GenotypeField Genotype

extract

NucleotideContigFragmentRDD IndexedFastaFile ReferenceContigMap ReferenceFile TwoBitFile

extractRegions

NucleotideContigFragmentRDD